View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3717_low_2 (Length: 503)
Name: NF3717_low_2
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3717_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 33 - 488
Target Start/End: Complemental strand, 47781457 - 47780992
Alignment:
| Q |
33 |
aaagaggtgcaacacaagatgtcactcatcctaattatacttacaagaccttaaagttttattatggactcaatca----acattccaccgttcaatgat |
128 |
Q |
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| T |
47781457 |
aaagaggtgcaacacaagaggtcactcatcctaattatacttacaagaccttaa-gttttattatggactcaatcaatcaacattcgaccgttcaataat |
47781359 |
T |
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| Q |
129 |
aat--gtacatataatnnnnnnnnn-----cttaggnnnnnnn--gtacaagtatcgattcccattttcttcatttggtgtcaaaaagtatttttt-ctt |
218 |
Q |
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| T |
47781358 |
gatatgtacatataataaaaaaaaaaaaaacttaggtttttttttgtacaagtatcgattcccattttcttcatttggtgtcaaaaagtttttttttctt |
47781259 |
T |
|
| Q |
219 |
catttaattccccaatacgatactggccaccttacatcccactctatctctaaattcaagatcttgtttgttttgtttatggatatatgctgtttggtat |
318 |
Q |
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| T |
47781258 |
catttaattccccaatacgatattggccaccttacatcccactctatctctaaattcaagatcttgtttgttttgtttatggatatatgctgtttagtat |
47781159 |
T |
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| Q |
319 |
cgatgttgtaatttctcatgcagatttctttgcactatctttaaatgtcaacatcttattatatgcannnnnnncatgagcaagtatatacttccaaaac |
418 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47781158 |
cgatattgtaatttctcatgcagatttctttgcactatctttaaatgtcaacatcttattatatgcatttttttcatgagcaagtatatacttccaaaac |
47781059 |
T |
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| Q |
419 |
acaattaactataccagttatttttacttatatgatgtatcctatctaattttatctattcttatctgtg |
488 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
47781058 |
acaattaactataccagttatttttacatat---atgtatcctatctaattttatctattcttatctgtg |
47780992 |
T |
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