View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3717_low_3 (Length: 483)
Name: NF3717_low_3
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3717_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 2184805 - 2185262
Alignment:
| Q |
17 |
attcttgggattttgtatttatttttgatcaaatttatgaaaacattgaatatgacaaagctgggaattcaggttctagccatagatttagagtctatac |
116 |
Q |
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| T |
2184805 |
attcttgggattttgtatttatttttgatcaaatttatgaaaacattgaatatgacaaagatgggaattcaggttctggccatagatttagagtctatac |
2184904 |
T |
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| Q |
117 |
acacatgattctttttgctgttaaagctgttaaaggcagctacttgacgttggagttgaaattcagtgtttaatctttatccagccctcccctatctggg |
216 |
Q |
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| T |
2184905 |
acacatgattctttttgctgttaaagctgttaaaggcagctacttgacgttggagttgaaattcagtgtttaatctttatccagccctcccctatctggg |
2185004 |
T |
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| Q |
217 |
gaatactttttgtgttttccatacataactttgatctttttatttgacacaggttggaaaatattgatgaaattttacggtcagctcgtctatccggata |
316 |
Q |
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| T |
2185005 |
gaatactttttgtgttttctatacataaccttgatctttttatatgacacaggttggaaaatattgatgaaattttacggtcagctcgtctatccggata |
2185104 |
T |
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| Q |
317 |
tttatacatccgaactgtacttaactgtccaaaccttcattagttcattttgcatccatctgctcgtcattacctaacgggcttagtactgactggcttt |
416 |
Q |
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| T |
2185105 |
tttatacatccgaactgtacttaactgtccaaaccttcattagttcattttgcatccatctgcttgtcattacctaacgggcttagtactgactggcttt |
2185204 |
T |
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| Q |
417 |
ctctttttctctacagagatggacagagcttccaggagaatctccacctattgatgat |
474 |
Q |
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| T |
2185205 |
ctctttttctctacagagatggacagagcttccaggagaatctccacctattgatgat |
2185262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 41962487 - 41962413
Alignment:
| Q |
263 |
acacaggttggaaaatattgatgaaattttacggtcagctcgtctatccggatatttatacatccgaactgtact |
337 |
Q |
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|||||||||| || ||||||||||| || | ||||||||||||||||| || |||||| |||| |||||||||| |
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| T |
41962487 |
acacaggttgcaacatattgatgaagttctgcggtcagctcgtctatctggctatttaaacattagaactgtact |
41962413 |
T |
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