View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3717_low_4 (Length: 464)
Name: NF3717_low_4
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3717_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 68 - 389
Target Start/End: Original strand, 37341038 - 37341359
Alignment:
| Q |
68 |
ggattatgaataccactgaaagtaataccataaatcaaagatccatgttgtgtgagttcatgttaattctaaatctatctttgaaaataatgttgatttt |
167 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341038 |
ggattatgaataccactgaaagaaataccataaatcaaagatccatgttgtgtgagtgcatgttaattctaaatctatctttgaaaataatgttgatttt |
37341137 |
T |
|
| Q |
168 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaataacagacaaaataatcataaaatagtac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37341138 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaataacagacaaaataatcataaaatagtac |
37341237 |
T |
|
| Q |
268 |
caaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgtcgcaagcaaccgaccacagtgaacacaacaacagttc |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |
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| T |
37341238 |
caaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgttgcaagcgaccgaccacagtgaacacaacaacggttc |
37341337 |
T |
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| Q |
368 |
ataagcagaagtcttttcattg |
389 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
37341338 |
ataagcagaaggcttttcattg |
37341359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 238 - 371
Target Start/End: Complemental strand, 23891045 - 23890912
Alignment:
| Q |
238 |
ataacagacaaaataatcataaaatagtaccaaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgtcgcaagc |
337 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
23891045 |
ataacagacaaaataatcatcaaatagtaccaaatacaatgtttatagagaataagagaaatggacaataaacctttatcttattgtcacagttgcaagt |
23890946 |
T |
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| Q |
338 |
aaccgaccacagtgaacacaacaacagttcataa |
371 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
23890945 |
gaccggccacagtgaacacaacaacagttcataa |
23890912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 68 - 389
Target Start/End: Original strand, 25889475 - 25889796
Alignment:
| Q |
68 |
ggattatgaataccactgaaagtaataccataaatcaaagatccatgttgtgtgagttcatgttaattctaaatctatctttgaaaataatgttgatttt |
167 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889475 |
ggattatgaataccactgaaagaaataccataaatcaaagatccatgttgtgtgagtgcatgttaattctaaatctatctttgaaaataatgttgatttt |
25889574 |
T |
|
| Q |
168 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaataacagacaaaataatcataaaatagtac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889575 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaataacagacaaaataatcataaaatagtac |
25889674 |
T |
|
| Q |
268 |
caaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgtcgcaagcaaccgaccacagtgaacacaacaacagttc |
367 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |
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| T |
25889675 |
caaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgttgcaagcgaccgaccacagtgaacacaacaactgttc |
25889774 |
T |
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| Q |
368 |
ataagcagaagtcttttcattg |
389 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
25889775 |
ataagcagaaggcttttcattg |
25889796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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