View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3717_low_8 (Length: 279)
Name: NF3717_low_8
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3717_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 2075680 - 2075873
Alignment:
| Q |
18 |
ctatcaaagtttattccataagaaaatttattacaaatatcacaattcacaacattcaaattcaatataagtgtttataaatctgaacatagtttaatca |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
2075680 |
ctatcaaagtttatttcataagaaaatttatta------tcacaattcacaacatacaaattcaatataagtgtttttaaatctgaacataatttaatca |
2075773 |
T |
|
| Q |
118 |
aatttgacaaaagatctcccatctatattacagaagattttacttatttgtatcacaatcttctctaatctttaatgatcggcaactcgggtgtagaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
2075774 |
aatttgacaaaagatctcccatctatattacagaagattttacttatttgtatcacaatcttctctagtctctaatgatcggcaacttgggtgtagaatg |
2075873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 2101315 - 2101508
Alignment:
| Q |
18 |
ctatcaaagtttattccataagaaaatttattacaaatatcacaattcacaacattcaaattcaatataagtgtttataaatctgaacatagtttaatca |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
2101315 |
ctatcaaagtttatttcataagaaaatttatta------tcacaattcacaacatacaaattcaatataagtgtttttaaatctgaacataatttaatca |
2101408 |
T |
|
| Q |
118 |
aatttgacaaaagatctcccatctatattacagaagattttacttatttgtatcacaatcttctctaatctttaatgatcggcaactcgggtgtagaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
2101409 |
aatttgacaaaagatctcccatctatattacagaagattttacttatttgtatcacaatcttctctagtctctaatgttcggcaactcgggtgtagaatg |
2101508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 2140846 - 2141039
Alignment:
| Q |
18 |
ctatcaaagtttattccataagaaaatttattacaaatatcacaattcacaacattcaaattcaatataagtgtttataaatctgaacatagtttaatca |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2140846 |
ctatcaaagtttatttcataagaaaatttatta------tcacaattcacaacatacaaattcaatataagtgtttttaaatctgaacataacttaatca |
2140939 |
T |
|
| Q |
118 |
aatttgacaaaagatctcccatctatattacagaagattttacttatttgtatcacaatcttctctaatctttaatgatcggcaactcgggtgtagaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||| |
|
|
| T |
2140940 |
aatttgacaaaagatctcccatctatattacagaagattttacttatttgtatcacaatcttctctagtctctaataatccgcaactcgggtgtagaatg |
2141039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 2116652 - 2116788
Alignment:
| Q |
21 |
tcaaagtttattccataagaaaatttattacaaatatcacaattcacaacattcaaattcaatataagtgtttataaatctgaacatagtttaatcaaat |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
2116652 |
tcaaagtttattccatatgaaaatttattacaaatatcacaattcacaacattcaaattcaatataagcgtttttaaatctgaacataatttaatcaaat |
2116751 |
T |
|
| Q |
121 |
ttgacaaaagatctcccatctatattacagaagattt |
157 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2116752 |
ttgacaaatgatctcccatctatattacagaagattt |
2116788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 2141081 - 2141141
Alignment:
| Q |
214 |
aatgagtaatcaaactaaaatatgaagacaacactgtcatgaactctcgacctttgcttct |
274 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
2141081 |
aatgagtaatcagactaaaatatgaagacaacactgtcatgaactctcgacttttgattct |
2141141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 2101550 - 2101610
Alignment:
| Q |
214 |
aatgagtaatcaaactaaaatatgaagacaacactgtcatgaactctcgacctttgcttct |
274 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
2101550 |
aatgagtaatcagactaaaatataaagacaacactgtcatgaactctcgacttttgattct |
2101610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 2075915 - 2075975
Alignment:
| Q |
214 |
aatgagtaatcaaactaaaatatgaagacaacactgtcatgaactctcgacctttgcttct |
274 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
2075915 |
aatgagtaatcagactaaaatataaagacaacactgtcatgaagtctcgacttttgattct |
2075975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 2116854 - 2116909
Alignment:
| Q |
214 |
aatgagtaatcaaactaaaatatgaagacaacactgtcatgaactctcgacctttg |
269 |
Q |
| |
|
|||||||||| | |||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
2116854 |
aatgagtaattagactaaaatataaatacaacactgtcatgaactctcgacttttg |
2116909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University