View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3717_low_9 (Length: 253)

Name: NF3717_low_9
Description: NF3717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3717_low_9
NF3717_low_9
[»] chr4 (4 HSPs)
chr4 (43-234)||(35036525-35036715)
chr4 (125-214)||(35020343-35020429)
chr4 (1-51)||(35036729-35036779)
chr4 (125-190)||(35044697-35044762)
[»] chr6 (1 HSPs)
chr6 (1-43)||(11529639-11529681)
[»] chr2 (1 HSPs)
chr2 (1-35)||(13294244-13294278)
[»] chr8 (1 HSPs)
chr8 (10-43)||(10096135-10096168)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 35036715 - 35036525
Alignment:
Q  43 taaaaagtgagttttttcagtnnnnnnncaagtggaagtggattcaattacttgctttatgtttttgggtgggagtaaactaacataccagacaagtggc 142  Q
    |||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  35036715 taaaaagtgagttttttcagttaaaaa-caagtggaagtggattcaattactcgctttatgtttttgggtgggagtaaactaacataccagacaagttgc 35036617  T
Q  143 tttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttggtgccggcag 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35036616 tttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttggtgccggcag 35036525  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 35020429 - 35020343
Alignment:
Q  125 acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaa 214  Q
    |||||||| |||||||||||||||||| || ||||||||||| ||||||| ||||   ||||||||||||||||| ||||||||||||||    
T  35020429 acataccatacaagtggctttgattgtagtatcagcatcacggccatctaaatct---tcatcaacggttgaaagcagcacatccatgaa 35020343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35036779 - 35036729
Alignment:
Q  1 tttttagttaattaaatgaaacttacaaaattaccctgcaattaaaaagtg 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35036779 tttttagttaattaaatgaaacttacaaaattaccctgcaatcaaaaagtg 35036729  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 35044762 - 35044697
Alignment:
Q  125 acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaac 190  Q
    |||||||||||| || | |||||| || ||  |||||||||||||||| || ||||||||||||||    
T  35044762 acataccagacacgtagttttgatagtagttccagcatcacgaccatcaatttcttgatcatcaac 35044697  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11529639 - 11529681
Alignment:
Q  1 tttttagttaattaaatgaaacttacaaaattaccctgcaatt 43  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  11529639 ttttaagttaattaaatgaaatttacaaaattacccttcaatt 11529681  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13294244 - 13294278
Alignment:
Q  1 tttttagttaattaaatgaaacttacaaaattacc 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  13294244 ttttaagttaattaaatgaaacttacaaaattacc 13294278  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 10096168 - 10096135
Alignment:
Q  10 aattaaatgaaacttacaaaattaccctgcaatt 43  Q
    |||||||||||||||||||||||||||| |||||    
T  10096168 aattaaatgaaacttacaaaattacccttcaatt 10096135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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