View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_high_1 (Length: 713)
Name: NF3718_high_1
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 21268740 - 21269079
Alignment:
| Q |
1 |
aacgcaacggttttgaaagtccatatgcattgcgaaggttgcgctaacaaagtaaccaaacaccttaacagtatcaaaggtatcatttttctcacactcc |
100 |
Q |
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| T |
21268740 |
aacgcaacggttttgaaagtctatatgcattgcgaaggttgcgctaacaaagtcaccaaacaccttaacggcatcaaaggtatcatttttctcacactcc |
21268839 |
T |
|
| Q |
101 |
tctgtttctacacattttttccgatctgggttttcatcattgttcttcaattcatttttcaatcgttaaaattaaacaaccatgtctctgtttttaaggt |
200 |
Q |
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| T |
21268840 |
tctgtttctacacattttttccgatctgggttttcatcattgttcttcaattcatttttcaatcgttaaaattgaacaaccatgtttctgtttttaaggt |
21268939 |
T |
|
| Q |
201 |
gttgatacggtgaaagcagagagtgaaaccggaaaagtaaccgtcaccggaaatgtggaccccacaaaactgagagacaatcttgctgagaagattaaga |
300 |
Q |
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| T |
21268940 |
gttgatacggtgaaagcagagagtgaaaccggaaaagtaaccgtcaccggaaatgtggaccccacaaaactgagagacaatcttgctgagaagattaaga |
21269039 |
T |
|
| Q |
301 |
agaaagttgaactcatgtcaccacttcccaagaaggataa |
340 |
Q |
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| T |
21269040 |
agaaagttgaactcatttcaccaattcccaagaaggataa |
21269079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 498 - 614
Target Start/End: Original strand, 21269239 - 21269355
Alignment:
| Q |
498 |
atgtaacagtcaattaccacttctgttttgaaattggtactacactgtcaaggatgtattgataagattgggaaaattgttatgaaaactaaaggtgggt |
597 |
Q |
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| T |
21269239 |
atgtaacagtcaattaccacttctgttttgaaattggtactacactgtcaaggatgtattgataagattgggaaaattgttatgaaaactaaaggtgggt |
21269338 |
T |
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| Q |
598 |
ttttatttttcaatatt |
614 |
Q |
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||||||||||||||||| |
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| T |
21269339 |
ttttatttttcaatatt |
21269355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 702
Target Start/End: Original strand, 50541872 - 50541949
Alignment:
| Q |
625 |
tgattttattttattttgatataaaagaaagaaatgcctaatcttttttggaatttctttggttggaaagtaagaata |
702 |
Q |
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|||||||||| | ||||||||| |||| ||||||| || |||||||||| |||| |||||||||||||||||||| |
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| T |
50541872 |
tgattttattattatttgatatataagatagaaatgtcttctcttttttggtatttagttggttggaaagtaagaata |
50541949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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