View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_high_12 (Length: 321)
Name: NF3718_high_12
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 73 - 310
Target Start/End: Complemental strand, 20368216 - 20367974
Alignment:
| Q |
73 |
agtgattaccgacaaatgtttgttcggcatatgaagtaattgacgcttcaatgacttcataagtgacttatttttatagaaacacggtagttatt----g |
168 |
Q |
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| T |
20368216 |
agtgattatggacaaatatttgttcggcatatgaagtaattgacgcttcaatgacttcataagtgacttatttttatagaaacacggtagttattaattg |
20368117 |
T |
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| Q |
169 |
ttttattattgttctcatgtttattttgatgatattaatataaacta-ttttaactaaatttttactcataaacatttgtttcgtgtgtggaaatctaaa |
267 |
Q |
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| T |
20368116 |
ttttattattgttctcatgtttattttgatgatattaatataaactaattttaactaaatttttactcataaacatttgtttcgtgtgtggaaatctaaa |
20368017 |
T |
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| Q |
268 |
ttacatgtaatacaaacgaagatttaactcctctcccttctct |
310 |
Q |
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| T |
20368016 |
ttacatgtaatacaaacgaagatttaactcctctcccttctct |
20367974 |
T |
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