View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_high_14 (Length: 311)
Name: NF3718_high_14
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 44785846 - 44785579
Alignment:
| Q |
14 |
agacgagtgttcatatgattttggtttcttctttgaatacacaacattaggaatttgttttgtagctgcttagtttctgcaagcatgtaaacttgatcga |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44785846 |
agacgagtgttcatatgattttggtttcttctt-----------cattaggaatttgttttgtagctgcttagtttctgcaagcatgtaaacttgatcga |
44785758 |
T |
|
| Q |
114 |
aaattctgcagacagaaatgtgatggttgagttggttaatattttataacattcactgttggttactaatgctttgaaattttgttgctggtgtgttttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44785757 |
aaattctgcagacagaaatgtgatggttgagttggttaatattttataacattcactgttggttactaatgctttgaaattttgttgctggtgtgttttc |
44785658 |
T |
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| Q |
214 |
attttaagagtaataacagtgtcatatacacctcataatgatagctgtggttcagtttcatttttctaattatatatcg |
292 |
Q |
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| T |
44785657 |
attttaagagtaataacagtgtcatatacacctcataatgatagctgtggttcagtttcatttttctaattatatatcg |
44785579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 28333786 - 28333500
Alignment:
| Q |
14 |
agacgagtgttcatatgattttggtttcttctttgaatacacaacattaggaatttgttttgtagctgcttagtttctgcaagcatgtaaacttgatcga |
113 |
Q |
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|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28333786 |
agacaagtgttcatatgattttggtttattctttcaatacacaacattaggaatttgttttgtagctgcttagtttctgcaagcatgtaaatttgatcga |
28333687 |
T |
|
| Q |
114 |
aaattctgcagacagaaatgtgatggttgagt--------tggttaatattttataacattcactgttggttactaatgctttgaaattttgttgctggt |
205 |
Q |
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| T |
28333686 |
aaattctgcagacagaaatgtgatggttgagtagaaatgttggttaatattttataacattcactgttggttactaatgctttgaaattttgttgctggt |
28333587 |
T |
|
| Q |
206 |
gtgttttcattttaagagtaataacagtgtcatatacacctcataatgatagctgtggttcagtttcatttttctaattatatatcg |
292 |
Q |
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| T |
28333586 |
gtgttttcatttaaagagtaataatagtgtcatatacacctcataatgataggtgtggttcagtttcatttttctaattatatatcg |
28333500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 12092628 - 12092579
Alignment:
| Q |
181 |
aatgctttgaaattttgttgctggtgtgttttcattttaagagtaataac |
230 |
Q |
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| T |
12092628 |
aatgccttgaattttttttgctggtgtgttttcattttaagggtaataac |
12092579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 12092719 - 12092684
Alignment:
| Q |
106 |
ttgatcgaaaattctgcagacagaaatgtgatggtt |
141 |
Q |
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| T |
12092719 |
ttgatcgaaaattctgctgacagaaatgtgatggtt |
12092684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 12092563 - 12092530
Alignment:
| Q |
241 |
acacctcataatgatagctgtggttcagtttcat |
274 |
Q |
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| T |
12092563 |
acacctcataatgataggtgtggttcagtttcat |
12092530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 26113070 - 26113161
Alignment:
| Q |
181 |
aatgctttgaaattttgttgctggtgtgttttcattttaagagtaataacagtgtcatatacacctcataatgatagctgtggttcagtttcat |
274 |
Q |
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||||| ||||| |||| |||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||| ||||||||| |||||| |
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| T |
26113070 |
aatgccttgaattttttttgctggtgtgttttcattttaagggtaataatagtggc--cgacacctcataatgataggtgtggttcaatttcat |
26113161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 26112979 - 26113014
Alignment:
| Q |
106 |
ttgatcgaaaattctgcagacagaaatgtgatggtt |
141 |
Q |
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| T |
26112979 |
ttgatcgaaaattctgctgacagaaatgtgatggtt |
26113014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 52591735 - 52591857
Alignment:
| Q |
143 |
agttggttaatattttataacattcactgttggttacta--atgctttgaaattttgttgctggtgtgttttcattttaagagtaataacagtgtcatat |
240 |
Q |
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|||||||||| ||||||| ||||||| ||| |||||| || ||||| || |||| ||| |||||||||||||||| ||||||||| ||||| || |
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| T |
52591735 |
agttggttaaaattttatcacattcattgtctgttactcttatactttggaactttgcagctagtgtgttttcattttaggagtaataatagtgttattg |
52591834 |
T |
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| Q |
241 |
acacctcataatgatagctgtgg |
263 |
Q |
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||||| |||||||||| ||||| |
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| T |
52591835 |
gcaccttataatgataggtgtgg |
52591857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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