View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_high_5 (Length: 506)
Name: NF3718_high_5
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Complemental strand, 46906268 - 46905790
Alignment:
| Q |
10 |
aatatgaagccatctcacccaattttttattccattacctggtaaccggttgtgccagttttgaaagaca--cacacacgttgttgcnnnnnnnnnnnnn |
107 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46906268 |
aataggaagccacctcacccaattttttattccattacctggtaaccggttgtgccagttttgaaagacagacacacacgttgttgcttttttttttttt |
46906169 |
T |
|
| Q |
108 |
naattagaatttaattgttgtatcatcttctccaagacaccaatggtgtctaccgatttgccatgagaaacaaacacagtacttttattcttcatctttg |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46906168 |
taattagaatttagttgttgtatcatcttctccaagacaccgatggtgtctaccgatttgccatgagaaacaaacacagtacttttattcttcatctttg |
46906069 |
T |
|
| Q |
208 |
atgtgttaaagttaatgatagatctaagtactagtaagaattaatttctacacaaatagttctttggcttttccaaacatagtaccagatctgaacaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46906068 |
atgtgttaaagttaatgatagatctaagtactagtaagaattaatttctacacaaatagttctttggctttttcaaacatagtaccagatctgaacaaga |
46905969 |
T |
|
| Q |
308 |
caaaacgtgttgctgcttcacatgttacaatggattttgcgttaccaaaaaatgttctttttcaattcagtccatctatttcttcacttttaatctcacc |
407 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46905968 |
caaaacgtgttgctgcttcacgtgttacaatggatttcgcgttaccaaaaaatgttctttttcaattcagtccatctatttcttcacttttaatctcacc |
46905869 |
T |
|
| Q |
408 |
agcaactacctaacctagtaaaccaaaatagaggctttggctatgtgttcgtcatttcccacgacattgatgaaagcttgaac |
490 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
46905868 |
agcaactacctaacccagtaaaccaaaacagaggatttggccatgtgttcg----ttcccacgacattgatgaaagcttgaac |
46905790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Complemental strand, 43406317 - 43405836
Alignment:
| Q |
10 |
aatatgaagccatctcacc-caattttttattccattacctggtaaccggttgtgccagttttgaaagacacacacacgttgttgcnnnnnnnnnnnnnn |
108 |
Q |
| |
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|||| ||||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
43406317 |
aataggaagccacctcacctcaattttttattccattacctagtaatcggttgtgccagttttgaaagacagacacacgttgttgctttttttttttaa- |
43406219 |
T |
|
| Q |
109 |
aattagaatttaattgttgtatcatcttctccaagacaccaatggtgtctaccgatttgccatgagaaacaaacacagtactttt-attcttcatctttg |
207 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43406218 |
aattcgaatttaattgttgtatcatcttctccaagacacaaatggtgtctaccgatttgccatgagaaacaaacacagtactttttattcttcatctttg |
43406119 |
T |
|
| Q |
208 |
atgtgttaaagttaatgatagatctaagtactagtaagaattaatttctacacaaatagttctttggcttttccaaacatagtaccagatctgaacaaga |
307 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43406118 |
atgtgttaaagttaatgatagatctaagtgctagcaagaattaatttctaccaaaatagttctttggcttttccaaacatagtaccagatctgaacaaga |
43406019 |
T |
|
| Q |
308 |
caaaacgtgttgctgcttcacatgttacaatggattttgcgttaccaaaaaatgttctttttcaattcagtccatctatttcttcacttttaatctcacc |
407 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43406018 |
caaaacgtgttgctgcttcacgtgttacaatggtttttgcgttaccaaaaaatgttctttttcaattcagtccatctatttcttcacttttaatctcacc |
43405919 |
T |
|
| Q |
408 |
agcaactacctaacctagtaaaccaaaatagaggctttggctatgtgttcgtcatttcccacgacattgatgaaagcttgaac |
490 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43405918 |
agcaactacctaacccagtaaaccaaaacagaggatttggccatgtgttcgtcatttcccacgacattgatgaaaccttgaac |
43405836 |
T |
|
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