View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3718_high_6 (Length: 489)
Name: NF3718_high_6
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_high_6 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 21131935 - 21131462
Alignment:
| Q |
16 |
caaggaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaa |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131935 |
caaggaagtaccattttgtggcaaagctatgatttcccaaccaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaa |
21131836 |
T |
|
| Q |
116 |
gccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131835 |
gccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattg |
21131736 |
T |
|
| Q |
216 |
gccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21131735 |
gccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgat |
21131636 |
T |
|
| Q |
316 |
aattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21131635 |
aattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgt |
21131536 |
T |
|
| Q |
416 |
caaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggtgcaaacagc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21131535 |
caaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggcgcaaacagc |
21131462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 21112975 - 21112506
Alignment:
| Q |
16 |
caaggaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaa |
115 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
21112975 |
caaggacctaccatcttgtggcaaagctatgatttcccgacaaatactctccttcctaatcaacctctcactagatatacaaaccttgtttcttcaagaa |
21112876 |
T |
|
| Q |
116 |
gccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattg |
215 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21112875 |
gccatagtaatcattcttctggcttttataagttgttctttgatgataacaatgttattcgtctcgattatgatggtcctgatatttcaagcacatattg |
21112776 |
T |
|
| Q |
216 |
gccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgat |
315 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||| |
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|
| T |
21112775 |
gccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagttcatatcatctgat |
21112676 |
T |
|
| Q |
316 |
aattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgt |
415 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||| || | | |||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
21112675 |
aattactttttttccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacagccgaaaaaacttgt |
21112576 |
T |
|
| Q |
416 |
caaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggtgcaaa |
485 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||| | |||| |||| ||||||||||||||||||| |
|
|
| T |
21112575 |
tagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaa |
21112506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 481
Target Start/End: Complemental strand, 18660097 - 18659632
Alignment:
| Q |
16 |
caaggaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaa |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
18660097 |
caaggaactaccatcttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaaaaa |
18659998 |
T |
|
| Q |
116 |
gccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattg |
215 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
18659997 |
gccaaagtaatcattcttctggcttctataagtttttctttgatgataacaatgttattcgtctcaattatgatggtcctgatgtttcaagtacatattg |
18659898 |
T |
|
| Q |
216 |
gccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgat |
315 |
Q |
| |
|
|||||| ||| |||||||| ||| |||||||||| | |||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
18659897 |
gccacctgctttattgttaagctggcaagctggaagatccaattacaatagtagtagaattgcattgttggattctcttggaaagttcatatcatctgat |
18659798 |
T |
|
| Q |
316 |
aattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgt |
415 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||| |||||||||| || | |||||||||||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
18659797 |
aattacattttttccacttatgattatggtatggtcatgcaaagaaaattaaccatggattctgatggtaatgttcgagtttacagtcgaaaaaacttgt |
18659698 |
T |
|
| Q |
416 |
caaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggtg |
481 |
Q |
| |
|
|| ||||||| ||||||||||||||||| ||| ||| |||||| ||| |||||| ||||||||| |
|
|
| T |
18659697 |
cagcaaattggcatgtttcatggcaagtcatacctgacacttgcatcattcatggagtttgtggtg |
18659632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 21124368 - 21123900
Alignment:
| Q |
20 |
gaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagata---cacaaaacttgtttcttcaagaag |
116 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
21124368 |
gaactaccattttgggggaaagctatgatttcccaacaaattctctccttcctaatcaacctctcactagataatacacaaaacttatttcttcaagaag |
21124269 |
T |
|
| Q |
117 |
ccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21124268 |
ccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatgttattcgtctcgattatgatggccctgatgtttcaagcacatattgg |
21124169 |
T |
|
| Q |
217 |
ccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgata |
316 |
Q |
| |
|
||||| ||| ||| |||||||| ||| |||||| | |||||||||||||| | ||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
21124168 |
ccaccttctttgttactaagttggcaagttggaagatccaattacaatagtaccataattgctttgttggattctcttggaaagttcatatcatctgata |
21124069 |
T |
|
| Q |
317 |
attacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgtc |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| || | |||||||| ||| |||||| |||| ||||| |||||||||||| |||| |
|
|
| T |
21124068 |
attacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgatggtaatgttcgagtttatagtcgaaaaaacatgtc |
21123969 |
T |
|
| Q |
417 |
aaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggtgcaaa |
485 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||| |||||| ||| |||||| ||||||||||||| |
|
|
| T |
21123968 |
agaaaattggtatgtttcatggcaagtcatatctgacacttgcatcattcatggagtttgtggtgcaaa |
21123900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 21097288 - 21097622
Alignment:
| Q |
27 |
cattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaat |
126 |
Q |
| |
|
|||||||||||| || | ||| | |||||| ||||||||||||| |||||| || || ||||| ||||| ||||| ||||||| ||| |||||||| |
|
|
| T |
21097288 |
cattttgtggcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaat |
21097387 |
T |
|
| Q |
127 |
cattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattggccaccacctt |
226 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | || || | |||| |||| || |||| |||||||| ||| | ||||||||| |||| |
|
|
| T |
21097388 |
cattcttctggcttctatatgttcttctttgatgatgaaaacattctcggtcttcattacgacggtcgcgatgtttctagctcttattggccaagtcctt |
21097487 |
T |
|
| Q |
227 |
ggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgataattacacttt |
326 |
Q |
| |
|
|| || |||||||||| | ||| || | |||| ||||||||| |||| ||| | || |||||| |||| | ||| |||||| ||||||| |||||| |
|
|
| T |
21097488 |
ggctgctaagttgggatgttggcagatctaatttcaatagtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcacttt |
21097587 |
T |
|
| Q |
327 |
ttccacatatgattatggcatggttatgcaaagaa |
361 |
Q |
| |
|
||| || | ||||||||| | ||| ||||||||| |
|
|
| T |
21097588 |
ttcaacttctgattatggaactgttctgcaaagaa |
21097622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 21106908 - 21107108
Alignment:
| Q |
28 |
attttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaatc |
127 |
Q |
| |
|
||||||||||| || | ||| | |||||| ||||||||||||| |||||| || || ||||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
21106908 |
attttgtggcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtagcttcaagaagtgagagtaatc |
21107007 |
T |
|
| Q |
128 |
attcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattggccaccaccttg |
227 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||| ||| | || |||| |||||||||| |||||| |||| ||| | ||||||||| |||||| |
|
|
| T |
21107008 |
attctactggcttctacaagttctactttgatgatgcaaatgttcttggtcttcattatgatggccctgatatttctagctcttattggccaaaaccttg |
21107107 |
T |
|
| Q |
228 |
g |
228 |
Q |
| |
|
| |
|
|
| T |
21107108 |
g |
21107108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 39130801 - 39131266
Alignment:
| Q |
16 |
caaggaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaa |
115 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
39130801 |
caaggtactacgatcttgtggcaaagctatgattttccaacaaatactctccttcctaatcaacctctcactagatacacaaaacttggttcctcaagaa |
39130900 |
T |
|
| Q |
116 |
gccagagtaatcattcttctggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattg |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
39130901 |
gtcagagtaatcattcttctggcttctataagttgttttttgatgataacaatattattcgtctagaatatgatggtcctgatgtttcaagcacatattg |
39131000 |
T |
|
| Q |
216 |
gccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagttcatttcatctgat |
315 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||| |||||||||||| |
|
|
| T |
39131001 |
gccaccaccatggttgttaagttggcaagctggaaggttcaattataatagtagtagaattgctttgttggattctcatggaaagtttatttcatctgat |
39131100 |
T |
|
| Q |
316 |
aattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgt |
415 |
Q |
| |
|
||||||| |||||||||||||||||| || | ||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
39131101 |
aattacattttttccacatatgattacggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgt |
39131200 |
T |
|
| Q |
416 |
caaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggtg |
481 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||||| | |||||||| |||||||||||||||| |
|
|
| T |
39131201 |
tagaaaattggtatgtttcatggcaagtcatatatgatacatgcaccattcatggaatttgtggtg |
39131266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 26700156 - 26700107
Alignment:
| Q |
29 |
ttttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
78 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
26700156 |
ttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaa |
26700107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 26735313 - 26735264
Alignment:
| Q |
29 |
ttttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
78 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
26735313 |
ttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaa |
26735264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 26693259 - 26693308
Alignment:
| Q |
29 |
ttttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
78 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||| ||||||||| ||||| |
|
|
| T |
26693259 |
ttttgtggcaaagctttgattttccaacagataccctccttcctgatcaa |
26693308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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