View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_high_7 (Length: 431)
Name: NF3718_high_7
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 2022542 - 2022217
Alignment:
| Q |
13 |
gagacgctagaggattgggatgccatggtacaaattaaggatagcaaacaatgccttatgttggacaatagggttgtggattactgatttgatgaaaaga |
112 |
Q |
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| T |
2022542 |
gagacgctagaggattgggatgccatagtacaaattaaggatagcaaacaatgctttatgttggagaatagggttgtggattactgatttgatgaaaaga |
2022443 |
T |
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| Q |
113 |
gaagcttataagaagaggcttatttattttaaannnnnnngagttaatgcaaatatctttataaataaggaaggagatatcatatgcaaattttaagcag |
212 |
Q |
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| T |
2022442 |
gaagcttataagaag--gcttatttattttaaaaatatttgagttaatgtaaatatctttataaataaagaaggagatatcatatgcaaattttaagctg |
2022345 |
T |
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| Q |
213 |
ttatattatttgagttataattataatagctaaggattgaaaatttgaaacgatgcaaggaaggatattgcacccatttatttatttgtgcatgaatatc |
312 |
Q |
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| T |
2022344 |
ttatattatttgagttataattataatagctaaggattgaaaatttgaaacgatgcaaggaaggatattgcacccatttatttatttgtgcatgaatatc |
2022245 |
T |
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| Q |
313 |
tttaccttcctaaaatgattctaactct |
340 |
Q |
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| T |
2022244 |
tttaccttcctaaaatgattctaactct |
2022217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 3166981 - 3166668
Alignment:
| Q |
22 |
gaggattgggatgccatggtacaaattaaggatagcaaacaa-----tgccttatgttggacaatagggttgtggattactgatttgatgaaaagagaag |
116 |
Q |
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| T |
3166981 |
gaggattgggatgccatggtaaaaattaaggatatcaaacaaaacaatacgttatgttggagaatagagttgtgattttatgatatgatgaaatgaaaag |
3166882 |
T |
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| Q |
117 |
cttataagaagaggcttatttattttaaannnnnnn----gagttaatgcaaatatctttataaataaggaaggagatatcatatgcaaattttaagcag |
212 |
Q |
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| T |
3166881 |
cttatatgaaggg--ttatttattcaaaaaacaaatatttgatttaatgcaaatatctttataaataaggaagcataaatcacatgcatattttgtgctg |
3166784 |
T |
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| Q |
213 |
ttatattatttgagttataattataatagctaaggattgaaaatttgaaacgatgcaaggaaggatattgcacccatttatttatttgtgcatgaatatc |
312 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| | | ||| ||||||||||||||| |
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| T |
3166783 |
ttat--tatttgaattataattataatagctaaggattgaaaatttgaaacggtgtgaggaaggatattggaaaccatta--ggtttgtgcatgaatatt |
3166688 |
T |
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| Q |
313 |
tttaccttcctaaaatgatt |
332 |
Q |
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| T |
3166687 |
tttaccttcctaaaatgatt |
3166668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 1737930 - 1737831
Alignment:
| Q |
229 |
ataattataatagctaaggattgaaaatttgaaacgatgcaaggaaggatattgcacccatttatttatttgtgcatgaatatctttaccttcctaaaat |
328 |
Q |
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| T |
1737930 |
ataattatagtagcta-ggattgaacatttgaaacgatatgaggaaggatatcgcacctattaat---tttgagcaagaatattttttccttcctaaaat |
1737835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 1743410 - 1743310
Alignment:
| Q |
229 |
ataattataatagctaaggattgaaaatttgaaacgatgcaaggaa--ggatattgcacccatttatttatttgtgcatgaatatctttaccttcctaaa |
326 |
Q |
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| T |
1743410 |
ataattataatagctaggg-ttgaaaatttgaaacgatacgaggaattggatattgcacc----tattaatttgaggaagaatattttttccttcctaaa |
1743316 |
T |
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| Q |
327 |
atgatt |
332 |
Q |
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|||||| |
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| T |
1743315 |
atgatt |
1743310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 1738760 - 1738728
Alignment:
| Q |
97 |
tgatttgatgaaaagagaagcttataagaagag |
129 |
Q |
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| T |
1738760 |
tgatttgaggaaaagagaagcttataagaagag |
1738728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 23851877 - 23851811
Alignment:
| Q |
12 |
agagacgctagaggattgggatgccatggtacaaattaaggatagcaaacaatgccttatgttggac |
78 |
Q |
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| T |
23851877 |
agagatgctagaggattcagatgccatggtaaaaattagggatagcaaactaaatcttatgttggac |
23851811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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