View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3718_low_10 (Length: 347)

Name: NF3718_low_10
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3718_low_10
NF3718_low_10
[»] chr3 (3 HSPs)
chr3 (10-177)||(38229011-38229178)
chr3 (225-347)||(38229226-38229348)
chr3 (312-347)||(38365525-38365560)
[»] chr7 (2 HSPs)
chr7 (251-327)||(47510357-47510433)
chr7 (294-326)||(47819407-47819439)
[»] chr2 (3 HSPs)
chr2 (259-318)||(38227260-38227319)
chr2 (293-326)||(26846250-26846283)
chr2 (257-326)||(43279046-43279115)
[»] chr6 (1 HSPs)
chr6 (259-312)||(32576183-32576236)
[»] chr5 (1 HSPs)
chr5 (294-323)||(27719604-27719633)
[»] chr1 (1 HSPs)
chr1 (20-53)||(39296547-39296580)
[»] chr8 (2 HSPs)
chr8 (252-327)||(2205185-2205258)
chr8 (298-326)||(5158693-5158721)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 38229011 - 38229178
Alignment:
Q  10 acatcatcattttgagtcttcaagagaacatctcccaacaggtacaaaagctttggacaaaagggaatcaacatatcacttccatcaccctcatctgatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38229011 acatcatcattttgagtcttcaagagaacatctcccaacaggtacaaaagctttggacaaaagggaatcaacatatcacttccatcaccctcatctgatg 38229110  T
Q  110 tactatgaagagcaaatagtttgtaaagcacaaaaaggacttctccacgaatctcctcactgcagcgc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38229111 tactatgaagagcaaatagtttgtaaagcacaaaaaggacttctccacgaatttcctcactgcagcgc 38229178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 38229226 - 38229348
Alignment:
Q  225 tcacaacaagatgacaacattcaatatgaatgaaccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaactatataaatataat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38229226 tcacaacaagatgacaacattcaatatgaatgaaccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaactatataaatataat 38229325  T
Q  325 aaactatatgaaatccgtcaatt 347  Q
    |||||||||||||||||||||||    
T  38229326 aaactatatgaaatccgtcaatt 38229348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 38365560 - 38365525
Alignment:
Q  312 atataaatataataaactatatgaaatccgtcaatt 347  Q
    |||||||||||||||| |||||||||||||||||||    
T  38365560 atataaatataataaagtatatgaaatccgtcaatt 38365525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 47510433 - 47510357
Alignment:
Q  251 tgaatgaaccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaactatataaatataataaa 327  Q
    ||||| |||||||  |||||||||| || ||||| ||||| |  ||||||||||| |||||||||||||||||||||    
T  47510433 tgaataaaccatccatttagtctctaaattatcactctctcactaatttagtccccaaactatataaatataataaa 47510357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 47819439 - 47819407
Alignment:
Q  294 caatttagtccctaaactatataaatataataa 326  Q
    |||||||||||||||||||| ||||||||||||    
T  47819439 caatttagtccctaaactatgtaaatataataa 47819407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 38227260 - 38227319
Alignment:
Q  259 ccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaactatataaa 318  Q
    |||||| |||||||  ||||||||||  |||| | |||||||||||||||||||||||||    
T  38227260 ccatcagtttagtccttgaactatcaacctctcaccaatttagtccctaaactatataaa 38227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 26846250 - 26846283
Alignment:
Q  293 acaatttagtccctaaactatataaatataataa 326  Q
    |||||||||||||||||||||||||||| |||||    
T  26846250 acaatttagtccctaaactatataaatacaataa 26846283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 43279046 - 43279115
Alignment:
Q  257 aaccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaactatataaatataataa 326  Q
    |||||||| |||||||||| |||||||| || ||   ||| ||||||||| ||||| |||||||||||||    
T  43279046 aaccatcaatttagtctctaaactatcactccctcttcaacttagtcccttaactacataaatataataa 43279115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 32576236 - 32576183
Alignment:
Q  259 ccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaacta 312  Q
    |||||| ||||||| || ||||||||||||||   |||||||||||||||||||    
T  32576236 ccatcaatttagtccctaaactatcagtctctctccaatttagtccctaaacta 32576183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 27719604 - 27719633
Alignment:
Q  294 caatttagtccctaaactatataaatataa 323  Q
    ||||||||||||||||||||||||||||||    
T  27719604 caatttagtccctaaactatataaatataa 27719633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 39296547 - 39296580
Alignment:
Q  20 tttgagtcttcaagagaacatctcccaacaggta 53  Q
    ||||||||||||| ||||||||||||||||||||    
T  39296547 tttgagtcttcaaaagaacatctcccaacaggta 39296580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 2205185 - 2205258
Alignment:
Q  252 gaatgaaccatcactttagtctctgaactatcagtctcttaacaatttagtccctaaactatataaatataataaa 327  Q
    |||| |||||||| |||| || || ||||||||||||||   | |||| |||||||||| ||||||||||||||||    
T  2205185 gaataaaccatcaatttaatccctaaactatcagtctctc--cgatttcgtccctaaacgatataaatataataaa 2205258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 5158721 - 5158693
Alignment:
Q  298 ttagtccctaaactatataaatataataa 326  Q
    |||||||||||||||||||||||||||||    
T  5158721 ttagtccctaaactatataaatataataa 5158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University