View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3718_low_11 (Length: 340)

Name: NF3718_low_11
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3718_low_11
NF3718_low_11
[»] chr3 (14 HSPs)
chr3 (1-327)||(2686372-2686698)
chr3 (4-321)||(2678462-2678782)
chr3 (203-317)||(3754470-3754584)
chr3 (203-317)||(4158014-4158128)
chr3 (203-274)||(4142247-4142318)
chr3 (203-317)||(3745878-3745992)
chr3 (16-90)||(9496727-9496801)
chr3 (28-175)||(7432263-7432410)
chr3 (60-175)||(13479308-13479423)
chr3 (55-115)||(3754319-3754379)
chr3 (46-90)||(4158244-4158288)
chr3 (203-317)||(2441885-2441999)
chr3 (46-115)||(4142409-4142478)
chr3 (198-234)||(12132950-12132986)
[»] chr7 (2 HSPs)
chr7 (203-317)||(1078245-1078359)
chr7 (46-175)||(1078390-1078519)
[»] chr5 (2 HSPs)
chr5 (203-316)||(11081680-11081793)
chr5 (203-280)||(2067174-2067251)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 2686698 - 2686372
Alignment:
Q  1 tacactaccttattcgtgatagtacaggtagtgataattgggttcacaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686698 tacactaccttattcgtgatagtacaggtagtgataattgggttcacaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatcca 2686599  T
Q  101 tgagtttccttttggtgttttccctgttgcaagatcaggtgaatttgtcagtggcactattaattggttggcctccagacaattccatccatgtacccgt 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686598 tgagtttccttttggtgttttccctgttgcaagatcaggtaaatttgtcagtggcactattaattggttggcctccagacaattccatccatgtacccgt 2686499  T
Q  201 tctattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686498 tctattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttt 2686399  T
Q  301 tgagggattgtttgtgcttgatctgtg 327  Q
    |||||||||||||||||||||||||||    
T  2686398 tgagggattgtttgtgcttgatctgtg 2686372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 2678782 - 2678462
Alignment:
Q  4 actaccttattcgtgatagtacaggtagtgataattgggttcacaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatga 103  Q
    ||||| |||||| |||||| |||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||    
T  2678782 actactttattcatgatagaacaggtagtgataatttggtccgcaaatctgaagtaaaagttcatactttgggttctaatatttggagaaacattcaaga 2678683  T
Q  104 gtttccttttggtgttttccctgttgcaagatcaggtgaatttgtcagtggcactattaattggttggcctccagacaattccatcc---atgtacccgt 200  Q
    |||||||||||||||||||||| ||| |||||| ||  ||||||| ||||||||||||||||||||||| |||||| ||||| ||||   ||||| || |    
T  2678682 gtttccttttggtgttttcccttttggaagatcgggaaaatttgttagtggcactattaattggttggcttccagaaaattctatccgggatgtaaccat 2678583  T
Q  201 tctattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttt 300  Q
    | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||  |||| |||| ||||||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaagctatcacctcctagttatggaggggcaaatgtgggtaaaatgcctaccttgggtgttt 2678483  T
Q  301 tgagggattgtttgtgcttga 321  Q
    ||| |||||| ||||||||||    
T  2678482 tgaaggattgcttgtgcttga 2678462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 3754470 - 3754584
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 302  Q
    |||||||||||||||||||||||| ||||| ||||||||||| || ||||||| ||  |||||||| ||||| ||| |||||    | ||| ||||||||    
T  3754470 tattgtttcttttgatttggcaaaggagtcatatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacatgtcggctttgagtgttttg 3754569  T
Q  303 agggattgtttgtgc 317  Q
    |||||||| ||||||    
T  3754570 agggattgcttgtgc 3754584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 4158128 - 4158014
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 302  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || ||||||| ||  |||||||| ||||| ||| || ||    | ||||||||||||    
T  4158128 tattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacttgtcggctttgggtgttttg 4158029  T
Q  303 agggattgtttgtgc 317  Q
    |||||||| ||||||    
T  4158028 agggattgcttgtgc 4158014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 4142318 - 4142247
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgt 274  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||  |||||||| |||||    
T  4142318 tattgtttcttttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgt 4142247  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 3745878 - 3745992
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 302  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||  ||||||| ||||||| ||| || ||    | |||||||||||     
T  3745878 tattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggagggatagatgtgtgtgacttgtcgtctttgggtgtttta 3745977  T
Q  303 agggattgtttgtgc 317  Q
    |||||||| ||||||    
T  3745978 agggattgcttgtgc 3745992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 9496801 - 9496727
Alignment:
Q  16 gtgatagtacaggtagtgataattgggttcacaaatctgaagtaaaggttcatactttgggttctaatatttgga 90  Q
    ||||||||| | || |||||| |||||||| ||||||||||||||| |||||| |||| ||||||||||||||||    
T  9496801 gtgatagtaaaagtggtgatagttgggttcgcaaatctgaagtaaaagttcattctttaggttctaatatttgga 9496727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 7432410 - 7432263
Alignment:
Q  28 gtagtgataattgggttcacaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttggtgttttccctgt 127  Q
    |||||| ||||| |||| ||||| |  |||| |||||||||||  ||||| | |||  |||||||| ||||| ||||||||||||||| | | ||||| |    
T  7432410 gtagtggtaatttggttaacaaaacaaaagtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttccttttggcggtgtccctat 7432311  T
Q  128 tgcaagatcaggtgaatttgtcagtggcactattaattggttggcctc 175  Q
    ||  ||| | ||  ||||||| |||||||| |||||||||||| ||||    
T  7432310 tgagagaacgggaaaatttgtaagtggcacaattaattggttgacctc 7432263  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 13479308 - 13479423
Alignment:
Q  60 aaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttggtgttttccctgttgcaagatcaggtgaatttgtcagtggcacta 159  Q
    ||||||||||| |||||| |  || ||||||||| ||| || |||||||| ||||||||| | |||||||  | ||| ||  ||||||| |||||||  |    
T  13479308 aaggttcatacattgggtacccatttttggaaaaccattcaggagtttccctttggtgttatgcctgttgagaaatctggaaaatttgtgagtggcagga 13479407  T
Q  160 ttaattggttggcctc 175  Q
    ||||||||||||||||    
T  13479408 ttaattggttggcctc 13479423  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 3754319 - 3754379
Alignment:
Q  55 aagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttgg 115  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| || | |||||||||    
T  3754319 aagtaaaggttcatactttgggtactaatatatggagaaccatccaggactatccttttgg 3754379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 4158288 - 4158244
Alignment:
Q  46 acaaatctgaagtaaaggttcatactttgggttctaatatttgga 90  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||    
T  4158288 acaaaactcaagtaaaggttcatactttgggtactaatatttgga 4158244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 2441885 - 2441999
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 302  Q
    |||| |||||||||||||||  |||||||||||||||||| |||  | ||||  || ||| |||||| |||| |||||| |  |  |||||  ||| |||    
T  2441885 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctgggggggtaaatgtgtgtaacttcttggccttgtttgtgttg 2441984  T
Q  303 agggattgtttgtgc 317  Q
    |||||||||||||||    
T  2441985 agggattgtttgtgc 2441999  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 4142478 - 4142409
Alignment:
Q  46 acaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttgg 115  Q
    ||||| || |||||| |||||||||||||||| ||||||| |||| || ||| || |||| |||||||||    
T  4142478 acaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 4142409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 12132950 - 12132986
Alignment:
Q  198 cgttctattgtttcttttgatttggcaaaagagtctt 234  Q
    |||| |||||||||||||||||||| |||||||||||    
T  12132950 cgttttattgtttcttttgatttgggaaaagagtctt 12132986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 1078359 - 1078245
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgctta-ccttgggtgtttt 301  Q
    |||||||||||||||||||| |||||| |||||||||||| | |  ||||||  |||||||||||||||||| ||| || | |||| |||||||||| ||    
T  1078359 tattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcac-ttcttagccttgggtgtgtt 1078261  T
Q  302 gagggattgtttgtgc 317  Q
    ||||||||| ||||||    
T  1078260 gagggattgcttgtgc 1078245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 1078519 - 1078390
Alignment:
Q  46 acaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttggtgttttccctgttgcaagatcaggtgaatt 145  Q
    ||||| ||||||| ||| ||||||| |||||| | |||  |||||||| ||| || |||||||||||||||||| ||||  ||| |  ||| ||  ||||    
T  1078519 acaaaactgaagtgaagattcatacattgggtaccaattcttggaaaagcattcaagagtttccttttggtgttgtcccaattggacaatctggaaaatt 1078420  T
Q  146 tgtcagtggcactattaattggttggcctc 175  Q
    | | |||||||| |||||||||||| ||||    
T  1078419 tctgagtggcacgattaattggttgacctc 1078390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 11081680 - 11081793
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 302  Q
    |||||||| ||| ||||||||||| ||||||||||||||||| || ||||||| ||  | |||||| |||||  ||||| ||    | ||||||||||||    
T  11081680 tattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcacctcctaatttggaaggggtggatgtgcgtaacttgtcggctttgggtgttttg 11081779  T
Q  303 agggattgtttgtg 316  Q
    |||||||| |||||    
T  11081780 agggattgcttgtg 11081793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 2067251 - 2067174
Alignment:
Q  203 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaa 280  Q
    ||||||||| | ||||||||  ||||||||||||||||||||    ||||| | |||||| ||||||||||| |||||    
T  2067251 tattgtttcatatgatttggggaaagagtcttatcaaaagattcttcctcccaattatggtggggtagatgtgtgtaa 2067174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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