View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_low_13 (Length: 314)
Name: NF3718_low_13
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 39130563 - 39130860
Alignment:
| Q |
17 |
attgtgtctattaataagaaaaatattatgattttagatatccaattttatctcctctgatttcctaattgtctcctaatttcaaacaggtaagctctca |
116 |
Q |
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| T |
39130563 |
attgtgtctattaataataaaaatattatgattttagatatccaattttatctcctctgatttcctaattgtctcctaatttcaaacaggtaagctctca |
39130662 |
T |
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| Q |
117 |
aagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaacactccactagagttgt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130663 |
aagctttccctcttaaacacaggtaatatccttttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaacactccactagagttgt |
39130762 |
T |
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| Q |
217 |
atctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaacaaatactctccttcctaat |
314 |
Q |
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| T |
39130763 |
atctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaacaaatactctccttcctaat |
39130860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 96 - 314
Target Start/End: Complemental strand, 18660256 - 18660038
Alignment:
| Q |
96 |
tttcaaacaggtaagctctcaaagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaat |
195 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||| ||| | ||||||||||| |||||| |||||| ||||||||||||||||| || |
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| T |
18660256 |
tttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaacacaacacttggtcttcaaacacagcat |
18660157 |
T |
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| Q |
196 |
caaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaac |
295 |
Q |
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|||| || || ||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
18660156 |
caaatgcttcattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaac |
18660057 |
T |
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| Q |
296 |
aaatactctccttcctaat |
314 |
Q |
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| T |
18660056 |
aaatactctccttcctaat |
18660038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 21113117 - 21112916
Alignment:
| Q |
113 |
ctcaaagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaacactccactagag |
212 |
Q |
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||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||| | |||| ||||||||||||||| | |||| | ||||| ||||| |
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| T |
21113117 |
ctcaaagcttttcctcttaaacacaggtaacatcatcttgctcgatgcgggtcaacataacacttggtcttcaaacacggcatcagatgctccattagag |
21113018 |
T |
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| Q |
213 |
ttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaacaaatactctccttccta |
312 |
Q |
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| T |
21113017 |
ttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaaggacctaccatcttgtggcaaagctatgatttcccgacaaatactctccttccta |
21112918 |
T |
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| Q |
313 |
at |
314 |
Q |
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|| |
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| T |
21112917 |
at |
21112916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 101 - 314
Target Start/End: Complemental strand, 21132089 - 21131876
Alignment:
| Q |
101 |
aacaggtaagctctcaaagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaac |
200 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| ||| | ||||||||||| |||||| || ||| ||||||||||||||| | |||| | |
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| T |
21132089 |
aacaggtaagctctcaaagcttttcctcttaaacaatggtaacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacggcatcagat |
21131990 |
T |
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| Q |
201 |
actccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaacaaata |
300 |
Q |
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|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||| || |||||||||||||||||||| ||||| |||| |
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| T |
21131989 |
gctccgttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaagtaccattttgtggcaaagctatgatttcccaaccaata |
21131890 |
T |
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| Q |
301 |
ctctccttcctaat |
314 |
Q |
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| T |
21131889 |
ctctccttcctaat |
21131876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 21124442 - 21124313
Alignment:
| Q |
185 |
aaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctat |
284 |
Q |
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|||||||| |||| | ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||| || ||| || |||||||| |
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| T |
21124442 |
aaacacagcatcagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaagaactaccattttgggggaaagctat |
21124343 |
T |
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| Q |
285 |
gattttccaacaaatactctccttcctaat |
314 |
Q |
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||||| ||||||||| |||||||||||||| |
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| T |
21124342 |
gatttcccaacaaattctctccttcctaat |
21124313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 21106819 - 21106951
Alignment:
| Q |
178 |
ggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggca |
277 |
Q |
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||||||||||||||| |||| | |||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||||| | || || |||||||| |
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| T |
21106819 |
ggtcttcaaacacagcatcattgaaaccactagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaaggaatcacaattttgtggca |
21106918 |
T |
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| Q |
278 |
aagctatgattttccaacaaatactctccttcc |
310 |
Q |
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|| | ||| | ||||||| ||||||||||||| |
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| T |
21106919 |
gagttttgactctccaacagatactctccttcc |
21106951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 26693261 - 26693302
Alignment:
| Q |
270 |
ttgtggcaaagctatgattttccaacaaatactctccttcct |
311 |
Q |
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||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
26693261 |
ttgtggcaaagctttgattttccaacagataccctccttcct |
26693302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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