View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3718_low_14 (Length: 313)

Name: NF3718_low_14
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3718_low_14
NF3718_low_14
[»] chr6 (6 HSPs)
chr6 (13-313)||(8349471-8349767)
chr6 (189-232)||(2117486-2117529)
chr6 (279-313)||(9582667-9582701)
chr6 (184-221)||(3738195-3738232)
chr6 (186-239)||(33911223-33911276)
chr6 (202-238)||(32515061-32515097)
[»] chr7 (6 HSPs)
chr7 (188-227)||(25297054-25297093)
chr7 (187-237)||(8094384-8094434)
chr7 (184-237)||(30496783-30496836)
chr7 (184-240)||(39542239-39542295)
chr7 (197-237)||(13960675-13960715)
chr7 (187-231)||(32791687-32791731)
[»] chr2 (5 HSPs)
chr2 (187-237)||(11513974-11514024)
chr2 (198-237)||(36677730-36677769)
chr2 (183-233)||(33087562-33087612)
chr2 (280-312)||(3673775-3673807)
chr2 (187-235)||(41240790-41240838)
[»] chr3 (9 HSPs)
chr3 (270-313)||(42808946-42808989)
chr3 (187-234)||(45590732-45590779)
chr3 (198-237)||(47584528-47584567)
chr3 (187-237)||(44295605-44295655)
chr3 (187-232)||(27795955-27796000)
chr3 (184-237)||(44014737-44014790)
chr3 (186-234)||(13709777-13709825)
chr3 (191-239)||(42530336-42530384)
chr3 (189-233)||(42809375-42809419)
[»] chr8 (5 HSPs)
chr8 (187-237)||(4763972-4764022)
chr8 (187-236)||(9700080-9700129)
chr8 (184-234)||(1664450-1664500)
chr8 (187-237)||(7918723-7918773)
chr8 (184-237)||(16162838-16162891)
[»] chr5 (3 HSPs)
chr5 (270-306)||(10771941-10771977)
chr5 (198-237)||(10152412-10152451)
chr5 (184-237)||(26516485-26516538)
[»] chr4 (4 HSPs)
chr4 (184-232)||(25896867-25896915)
chr4 (280-313)||(17884035-17884068)
chr4 (184-237)||(50746053-50746106)
chr4 (208-244)||(49004004-49004040)
[»] chr1 (7 HSPs)
chr1 (187-234)||(6659761-6659808)
chr1 (190-237)||(43371836-43371883)
chr1 (184-233)||(32515380-32515429)
chr1 (280-313)||(47002944-47002977)
chr1 (280-313)||(51190828-51190861)
chr1 (187-231)||(1662657-1662701)
chr1 (184-237)||(23370241-23370296)
[»] scaffold0199 (1 HSPs)
scaffold0199 (184-234)||(6891-6941)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 8349471 - 8349767
Alignment:
Q  13 tactaggaatggtagaccatattgacatgctgatgtgaagattgatactgagagacttagaagaagcttgtatatttttcctttcctgcaataaagtaaa 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8349471 tactaggaatggaagaccatattgacatgctgatgtgaagattgatactgagagacttagaagaagcttgtatatttttcctttcctgcaataaagtaaa 8349570  T
Q  113 aattatcatcattaatcacatactctaaagaaaagttaatttgagttgtgatacctttagggctgtttggaagtttatctactagcataagcacatgtga 212  Q
    |||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8349571 aattctaatcattaatcacataatctaaagaaaagttaatttgagctgtgatacctttagggctgtttggaagtttatctactagcataagtacatgtga 8349670  T
Q  213 gactatttaagagagcttatgaaaataagttagtagtagcatatgtccatagcttaattatgaaagcaacttatataaaaacaatttaactttattttat 312  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  8349671 gactattttagagagcttatgaaaataagttagtagtagcatatgtccatagc----ttatgaaagcaacttatataaaaacaatttaactttattttat 8349766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 2117529 - 2117486
Alignment:
Q  189 atctactagcataagcacatgtgagactatttaagagagcttat 232  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||    
T  2117529 atctactagcataagcacctgtgagactattcaagtgagcttat 2117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 9582667 - 9582701
Alignment:
Q  279 caacttatataaaaacaatttaactttattttatc 313  Q
    ||||||||||||||||||||| |||||||||||||    
T  9582667 caacttatataaaaacaatttcactttattttatc 9582701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 3738232 - 3738195
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactattta 221  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  3738232 agtttatctactagcataagcacttgtgagactgttta 3738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 33911223 - 33911276
Alignment:
Q  186 tttatctactagcataagcacatgtgagactatttaagagagcttatgaaaata 239  Q
    |||||||||||||| ||||||  |||| ||| ||||||||| ||||||||||||    
T  33911223 tttatctactagcacaagcactcgtgaaactgtttaagagatcttatgaaaata 33911276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 32515061 - 32515097
Alignment:
Q  202 agcacatgtgagactatttaagagagcttatgaaaat 238  Q
    |||||||||||||||||||| || |||||||||||||    
T  32515061 agcacatgtgagactatttaggaaagcttatgaaaat 32515097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 25297093 - 25297054
Alignment:
Q  188 tatctactagcataagcacatgtgagactatttaagagag 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25297093 tatctactagcataagcacatgtgagactatttaagagag 25297054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 8094434 - 8094384
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||||||||||||||| ||||||||||||| |||||  |||||||||    
T  8094434 ttatctactagcataagcacttgtgagactatttgagagattttatgaaaa 8094384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 30496836 - 30496783
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||||||||||||||||||| | || ||||||| || ||||||||||||||||    
T  30496836 agtttatctactagcataagcccttgcgagactacttgagagagcttatgaaaa 30496783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 39542239 - 39542295
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaataa 240  Q
    ||||||||||||||||||||||| || |||||  ||| |||||||||||| ||||||    
T  39542239 agtttatctactagcataagcacttgcgagacagttttagagagcttatggaaataa 39542295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 13960675 - 13960715
Alignment:
Q  197 gcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||||| || |||||||||| ||||||||||||||||    
T  13960675 gcataagcacttgcgagactatttgagagagcttatgaaaa 13960715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 32791687 - 32791731
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagctta 231  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||||    
T  32791687 ttatctactagcataagcactagtgagactatttaggagaactta 32791731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 11514024 - 11513974
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  11514024 ttatctactagcataagcacttgtgagactgttttagagagcttatgaaaa 11513974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 36677769 - 36677730
Alignment:
Q  198 cataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  36677769 cataagcacttgtgagactattcaagagagcttatgaaaa 36677730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 33087562 - 33087612
Alignment:
Q  183 aagtttatctactagcataagcacatgtgagactatttaagagagcttatg 233  Q
    ||||||||| ||||||||||||||||||| |||||||| ||| || |||||    
T  33087562 aagtttatccactagcataagcacatgtgtgactatttgagatagtttatg 33087612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 3673807 - 3673775
Alignment:
Q  280 aacttatataaaaacaatttaactttattttat 312  Q
    ||||||||| |||||||||||||||||||||||    
T  3673807 aacttatatgaaaacaatttaactttattttat 3673775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 41240790 - 41240838
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaa 235  Q
    |||| ||||||||||||||  ||||| ||| ||||||||||||||||||    
T  41240790 ttatatactagcataagcatttgtgaaactgtttaagagagcttatgaa 41240838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 42808989 - 42808946
Alignment:
Q  270 ttatgaaagcaacttatataaaaacaatttaactttattttatc 313  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  42808989 ttatgaaaacagcttatataaaaacaatttaactttattttatc 42808946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 45590779 - 45590732
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatga 234  Q
    |||||||||||||||||||| ||||||||| |||  ||||||||||||    
T  45590779 ttatctactagcataagcacttgtgagactgtttgggagagcttatga 45590732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 47584567 - 47584528
Alignment:
Q  198 cataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  47584567 cataagcacttgtgagactatttgagagagcttatgaaaa 47584528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 44295655 - 44295605
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||    
T  44295655 ttatctacaagcataagcacttgtgatactatttgagagaacttatgaaaa 44295605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 27795955 - 27796000
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttat 232  Q
    ||||||||| |||||||||| ||||| ||| |||||||||||||||    
T  27795955 ttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 44014737 - 44014790
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||| | ||||||||||    
T  44014737 agtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaa 44014790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 13709777 - 13709825
Alignment:
Q  186 tttatctactagcataagcacatgtgagactatttaagagagcttatga 234  Q
    |||||||||| | |||||||| |||||||||||||| ||||| ||||||    
T  13709777 tttatctactgggataagcacttgtgagactatttaggagagtttatga 13709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 42530384 - 42530336
Alignment:
Q  191 ctactagcataagcacatgtgagactatttaagagagcttatgaaaata 239  Q
    |||||||||||||||| ||||||||| ||| ||| |||||||| |||||    
T  42530384 ctactagcataagcacttgtgagactgtttcagaaagcttatggaaata 42530336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 42809419 - 42809375
Alignment:
Q  189 atctactagcataagcacatgtgagactatttaagagagcttatg 233  Q
    |||||||||||| ||||| |||||||| |||||| ||||||||||    
T  42809419 atctactagcattagcacttgtgagacaatttaaaagagcttatg 42809375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 4764022 - 4763972
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||| |||||||||||||| | ||||||||||||||||||||| ||||||    
T  4764022 ttatccactagcataagcacctatgagactatttaagagagcttttgaaaa 4763972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 9700129 - 9700080
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaa 236  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||| |||||    
T  9700129 ttatctactagcataaacacttgtgagactatttgagagagcttgtgaaa 9700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 1664500 - 1664450
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatga 234  Q
    ||||||||||||||||||| ||| ||||||||| |||  ||||||||||||    
T  1664500 agtttatctactagcataaacacttgtgagactgtttgggagagcttatga 1664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 7918723 - 7918773
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||||||||||| ||| ||||||||| |||  |||||||||||||||    
T  7918723 ttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaa 7918773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 16162891 - 16162838
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||| | ||||||||||    
T  16162891 agtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaa 16162838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 10771941 - 10771977
Alignment:
Q  270 ttatgaaagcaacttatataaaaacaatttaacttta 306  Q
    ||||||||||||||||||| |||||||||||||||||    
T  10771941 ttatgaaagcaacttatatgaaaacaatttaacttta 10771977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 10152451 - 10152412
Alignment:
Q  198 cataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  10152451 cataagcacatgtgagactattttggagagcttatgaaaa 10152412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 26516538 - 26516485
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    ||||||| |||| |||||||||| |||| || | ||||||||||||||||||||    
T  26516538 agtttatttactggcataagcacctgtgggaatgtttaagagagcttatgaaaa 26516485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 25896915 - 25896867
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttat 232  Q
    ||||||||||||||||| ||||| ||||||||| |||| ||||||||||    
T  25896915 agtttatctactagcattagcacttgtgagactgtttaggagagcttat 25896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 17884068 - 17884035
Alignment:
Q  280 aacttatataaaaacaatttaactttattttatc 313  Q
    |||||||| |||||||||||||||||||||||||    
T  17884068 aacttatacaaaaacaatttaactttattttatc 17884035  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 50746106 - 50746053
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||||||||| |||||||||| |||||||||||||  | ||| |||||||||    
T  50746106 agtttatctacttgcataagcacttgtgagactatttgtgtgagtttatgaaaa 50746053  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 49004004 - 49004040
Alignment:
Q  208 tgtgagactatttaagagagcttatgaaaataagtta 244  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  49004004 tgtgagactatttgagagaacttatgaaaataagtta 49004040  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 6659808 - 6659761
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagcttatga 234  Q
    |||||||||||||||||||| |||||||||||||  || |||||||||    
T  6659808 ttatctactagcataagcacttgtgagactatttgggatagcttatga 6659761  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 43371836 - 43371883
Alignment:
Q  190 tctactagcataagcacatgtgagactatttaagagagcttatgaaaa 237  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  43371836 tctactggcataagcacttgtgagactgtttgagagagcttatgaaaa 43371883  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 32515380 - 32515429
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatg 233  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||||    
T  32515380 agtttatctactaacataagcacttgtgagactgtttgggagagcttatg 32515429  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 47002944 - 47002977
Alignment:
Q  280 aacttatataaaaacaatttaactttattttatc 313  Q
    ||||| ||||||||||||||||||||||||||||    
T  47002944 aacttgtataaaaacaatttaactttattttatc 47002977  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 51190861 - 51190828
Alignment:
Q  280 aacttatataaaaacaatttaactttattttatc 313  Q
    |||||||| |||||||||||||||||||||||||    
T  51190861 aacttatacaaaaacaatttaactttattttatc 51190828  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 1662701 - 1662657
Alignment:
Q  187 ttatctactagcataagcacatgtgagactatttaagagagctta 231  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||    
T  1662701 ttatctactagcataagtacatgcgagactatttgcgagagctta 1662657  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 23370241 - 23370296
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactattt--aagagagcttatgaaaa 237  Q
    ||||||| ||| ||||||||||| ||||||||| |||  |||||||||||||||||    
T  23370241 agtttatgtacaagcataagcacttgtgagactgtttaaaagagagcttatgaaaa 23370296  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 6941 - 6891
Alignment:
Q  184 agtttatctactagcataagcacatgtgagactatttaagagagcttatga 234  Q
    ||||||||||||||||||| ||| ||||||||| |||  ||||||||||||    
T  6941 agtttatctactagcataaacacttgtgagactgtttgggagagcttatga 6891  T

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