View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_low_17 (Length: 255)
Name: NF3718_low_17
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6663824 - 6663575
Alignment:
| Q |
1 |
agaaaaagaatgtatatgtgacgtagtctatttgaaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgca |
100 |
Q |
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| T |
6663824 |
agaaaaagaatgtatatgtgacgtagtctatttgaaggatgcagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgca |
6663725 |
T |
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| Q |
101 |
aaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6663724 |
aaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgca |
6663625 |
T |
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| Q |
201 |
tgtctatgtcaaggtttgatcatctttcaatgcgtcctttatctgtgttc |
250 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
6663624 |
tgtcaatgtcaaggtttgatcatctttcaatgtgtcctttatttgtgttc |
6663575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 13244060 - 13244307
Alignment:
| Q |
3 |
aaaaagaatgtatatgtgacgtagtctatttgaaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaa |
102 |
Q |
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||||| || ||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13244060 |
aaaaaaaaagtatatgtgacgtagtctatttgaaggatgcaggaaataaagttcataatgagcttgcacttcctctagatgtggctgaagtgattgcaaa |
13244159 |
T |
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| Q |
103 |
acatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatg |
202 |
Q |
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| T |
13244160 |
acatcttaatgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctggccgccccaccgattcaatggagatcatcttcttccatg |
13244259 |
T |
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| Q |
203 |
tctatgtcaaggtttgatcatctttcaatgcgtcctttatctgtgttc |
250 |
Q |
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| T |
13244260 |
tcaatgtcgtggtttgatcatctttcgatatgtcctttatttgtgttc |
13244307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6655709 - 6655473
Alignment:
| Q |
1 |
agaaaaagaatgtatatgtgacgtagtctatttgaaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgca |
100 |
Q |
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|||||||||| ||| |||||| | ||||||||| |||||| ||| | |||||||||||||| | ||| | ||||||||||||||| |||||| |||||| |
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| T |
6655709 |
agaaaaagaaagtacatgtgatgcagtctatttaaaggatgcagaggataaagctcataatcaattttcccttcctctagatgtgtttgaagtaattgca |
6655610 |
T |
|
| Q |
101 |
aaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgca |
200 |
Q |
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| T |
6655609 |
aaacatattaatgatgttcttgcttatttgcattttcgagctagcaataaactc--aggtctagccgcaccaccaattcaatggagatcatcttcttcca |
6655512 |
T |
|
| Q |
201 |
tgtctatgtcaaggtttgatcatctttcaatgcgtcctt |
239 |
Q |
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|||| |||||||||||||| ||||||||||| |||||| |
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| T |
6655511 |
tgtcaatgtcaaggtttgacgatctttcaatgtgtcctt |
6655473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 6653506 - 6653707
Alignment:
| Q |
49 |
taaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaat |
148 |
Q |
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|||||||||| |||| | |||| |||||||||| |||| |||||||||||| |||| ||||| | ||||| ||||||||||||||||||||||| |||| |
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| T |
6653506 |
taaagctcatgatgaatctgcatttcctctagacgtggttgaagtgattgccaaacgtcttagcaatgtggttgattatttgcattttcgagctgccaat |
6653605 |
T |
|
| Q |
149 |
aaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatcatctttcaatgcgtcctttatctgtgt |
248 |
Q |
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|||||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||| | |||||| |||| |||||| |||| ||| ||||| |
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| T |
6653606 |
aaactctttcgtgcagccgccccaccaattcaatggagatcatcttcttccatgtccatgtcacgatttgatgatctctcaatgtctcctctatttgtgt |
6653705 |
T |
|
| Q |
249 |
tc |
250 |
Q |
| |
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|| |
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| T |
6653706 |
tc |
6653707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 13246269 - 13246105
Alignment:
| Q |
68 |
gcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccg |
167 |
Q |
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||||| |||||||| || | |||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| |||||||||| | |
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| T |
13246269 |
gcactgcctctagacgtagttgaagtgattgccaaacatcttaacaatgtgattgattatttgcattttcgggcttccaataaactctttcgtctagctg |
13246170 |
T |
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| Q |
168 |
ccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatcatctttcaatg |
232 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||| |||||| | |||||| |||| |||||| |
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| T |
13246169 |
ccccaccaattcaatggagatcatcttcttccatgtcaatgtcacgatttgatgatctctcaatg |
13246105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 6681733 - 6681947
Alignment:
| Q |
35 |
aaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttgattatttgcatt |
134 |
Q |
| |
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|||||| ||||| ||||||||||| || | ||| | |||||||||||||| |||||| |||||||||||| |||| ||||| |||| ||||||||||| |
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| T |
6681733 |
aaggatgcaggggataaagctcatgatcaattttcctttcctctagatgtgtttgaagtaattgcaaaacatattaatgatgttcttgcttatttgcatt |
6681832 |
T |
|
| Q |
135 |
ttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatcatctttcaatgcg |
234 |
Q |
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|||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||| || ||| ||||||| |||| |||||| |
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| T |
6681833 |
ttcgagctagcaataaactccttcgtctagccgcaccatcaattcaatggagatcatcttcttcaatgtcaatatcacagtttgatgatctctcaatgtc |
6681932 |
T |
|
| Q |
235 |
tcctttatctgtgtt |
249 |
Q |
| |
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|||| ||| |||||| |
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| T |
6681933 |
tcctctatttgtgtt |
6681947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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