View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_low_19 (Length: 246)
Name: NF3718_low_19
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_19 |
 | |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15658776 - 15658539
Alignment:
| Q |
1 |
ttgctgcattgtacgtaactacctggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaaatttatcagcaattttggtaat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
15658776 |
ttgctgcattgtccgtaactacctggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaattttatcagcagttttggtaat |
15658677 |
T |
|
| Q |
101 |
gtcagatgcatcaatagactttaaaataaaagttccctttggactacgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcagtc |
200 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15658676 |
gtcagatggatcaatagactttaaaaaaaaagttccctttggactatgtaccaaaaaattcaatatagttcttctccttctatcagtccaaccatcagtc |
15658577 |
T |
|
| Q |
201 |
ataattgtgcaaccccatttctcccaaacagctctgtg |
238 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||| |
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| T |
15658576 |
ataattatgcaaccacatttctcccaaacagctctgtg |
15658539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 245788 - 246020
Alignment:
| Q |
3 |
gctgcattgtacgtaactacctggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaaatttatcagcaattttggtaatgt |
102 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
245788 |
gctgcattgtctgtaactacctagacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaattttatcaggagttttggtaatgt |
245887 |
T |
|
| Q |
103 |
cagatgcatcaatagactttaaaataaaa-gttccctttggactacgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcagtca |
201 |
Q |
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| T |
245888 |
aagatgc-tcaatagactttaaaaaaaaaagttccctttggactatgtaccaaaaagttcaatatagttcttctcctcctatcagtccaaccatcggtca |
245986 |
T |
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| Q |
202 |
taattgtgcaaccccatttctcccaaacagctct |
235 |
Q |
| |
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||||||||||||| |||||||||||||| |||| |
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| T |
245987 |
taattgtgcaaccatatttctcccaaacaactct |
246020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 244709 - 244473
Alignment:
| Q |
5 |
tgcattgtacgtaactacctggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaaa-tttatcagcaattttggtaatgtc |
103 |
Q |
| |
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|||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
244709 |
tgcattgtccgtaactacatggccaacattttcttctccaatcttttcaacaacatcatcaatcatcttaaaaaaatttattagcagttttggtaatgtc |
244610 |
T |
|
| Q |
104 |
agatgcatcaatagactttaaaataaaa-----gttccctttggactacgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcag |
198 |
Q |
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||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
244609 |
agatgcatcaatagactttaaaaaaaaaaaaaagctccctttggactatgtaccaaaaaattcaatatagttcttctcctcctatcagtccaaccatcgg |
244510 |
T |
|
| Q |
199 |
tcataattgtgcaaccccatttctcccaaacagctct |
235 |
Q |
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|||||||||||||||| |||||| |||||||||||| |
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| T |
244509 |
tcataattgtgcaaccatatttcttccaaacagctct |
244473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 4377325 - 4377385
Alignment:
| Q |
27 |
acaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaaatttatcag |
87 |
Q |
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|||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
4377325 |
acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcag |
4377385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 4384898 - 4384958
Alignment:
| Q |
27 |
acaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaaatttatcag |
87 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
4384898 |
acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcag |
4384958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 4390008 - 4390068
Alignment:
| Q |
27 |
acaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaaatttatcag |
87 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
4390008 |
acaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcag |
4390068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 4360370 - 4360422
Alignment:
| Q |
24 |
tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
76 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||| ||||| ||||| |
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| T |
4360370 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaa |
4360422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 4365766 - 4365818
Alignment:
| Q |
24 |
tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
76 |
Q |
| |
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|||||| |||||||||| |||| |||||||||||| ||||| ||||||||||| |
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| T |
4365766 |
tggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaa |
4365818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 4370166 - 4370199
Alignment:
| Q |
24 |
tggacaacattttcttctccaatctcttcaacaa |
57 |
Q |
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|
|||||||||||||||||||||| ||||||||||| |
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| T |
4370166 |
tggacaacattttcttctccaacctcttcaacaa |
4370199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 5725535 - 5725483
Alignment:
| Q |
24 |
tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
76 |
Q |
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||||||||||||||||| |||| |||||||||| ||||| ||||||||||| |
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| T |
5725535 |
tggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
5725483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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