View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_low_2 (Length: 562)
Name: NF3718_low_2
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 26481374 - 26480834
Alignment:
| Q |
1 |
ttgacatcatatttagttgctaaacatgacattgannnnnnnnnngttataattagttatttgtcattctaatgacacatacctttcttataggtaaaat |
100 |
Q |
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| T |
26481374 |
ttgacatcatatttagctgctaaacatgacattgattttttttt-gttataattagttatttgtcattctaatgacacatacctttcttataggtaaaat |
26481276 |
T |
|
| Q |
101 |
ttgatcatgttgtaagatggtgctttgcaaacttgcaagagggcacttcatttaatatcgattcagctaagatcttacaatgacctagttttgaatcctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26481275 |
ttgatcatgttgtaagatggtgctttgcaaacttgcaagagggcacttcatttaatatcaattcagctaagatcttacaatgacctagttttgaatcctg |
26481176 |
T |
|
| Q |
201 |
atggataaatcaagtgtacttttatcggtgttttttgagcgttgaagttgtatacgagcatggttagtcttcgagacctaactcgcatggatttttattt |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
26481175 |
atggataaatcaagtgtacttttgtcggtgttttttgagcgttgaagttgtatacgaacatggttagtcttcgagacctaacacgcatggattttcattt |
26481076 |
T |
|
| Q |
301 |
atcaaatttttg-ttttgcaagagggcacactctctctttcatttctatttctatgtagccacttgacattaacattattcattagtctaaatcaagctt |
399 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26481075 |
atcaaatttttgtttttgcaagagggcaca--ctctctttcatttctatttctatgtagccacttgacattaacattattcattagtctaaatcaagctt |
26480978 |
T |
|
| Q |
400 |
tgcttgcaaatttattctctcattttaagcttgaagcaatattgtaaggtaaggggcaaccagattaatatttcaaactttgtaggaacaaatccagaga |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26480977 |
tgcttgcaaatttattctctcattttaagcttgaagcaatattgtaaggtaaggggcaaccaaattaatatttcaaactttgtaggaacaaatccagaga |
26480878 |
T |
|
| Q |
500 |
ggatgagggcaacttccattattatcacatatggaccctctctc |
543 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26480877 |
ggatgagggcaacttccattattatcacatatggaccctctctc |
26480834 |
T |
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