View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_low_20 (Length: 236)
Name: NF3718_low_20
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6663838 - 6664056
Alignment:
| Q |
1 |
attttcctatttcttctttgagtgtaccaattatcctacaaaacatatatatcattttactatgttaaaaacataatcaaattnnnnnnnngtccttata |
100 |
Q |
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| T |
6663838 |
attttcctatttcttct--gagtgtaccaattatcctacaaaacatatatatcattttactatgttaaaaacataatcaaattaaaaaaaagtccttata |
6663935 |
T |
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| Q |
101 |
tataggactaatgtatgttagtaacaaatgtaaccaaaaagttaaagtaccttgtatctggcatgaaccatcttgaataagaccgtttttcttataaatt |
200 |
Q |
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| T |
6663936 |
tataggattaatgtgtgttagtaacaaatgtaaccaaaaagttaaagtaccttgtatctggcatgaaccatcttgaataagaccgtcttgctgataaatt |
6664035 |
T |
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| Q |
201 |
ggagaaatgttgagaagttac |
221 |
Q |
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| T |
6664036 |
ggagaaatgttgagaagttac |
6664056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 13244043 - 13243872
Alignment:
| Q |
1 |
attttcctatttcttctttgagtgtaccaattatcctacaaaacatatatatcattttactatgttaaaaacataatcaaattnnnnnnnngtccttata |
100 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13244043 |
attttcctgtttcttctttgagagtaccaattatcctacaaaacatatatatcattttactatgttaaaaacataatcaaatt-aaaaaaagtccttata |
13243945 |
T |
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| Q |
101 |
tataggactaatgtatgttagtaacaaatgtaaccaaaaagttaaagtaccttgtatctggcatgaaccatct |
173 |
Q |
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| T |
13243944 |
tataggactaacgtatgtttgtaacaaatgtaatcaaaaagttaaagtaccttgtctctggcatgaaccatct |
13243872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6655774 - 6655863
Alignment:
| Q |
1 |
attttcctatttcttctttgagtgtaccaattatcctacaaaacat-------atatatcattttactatgttaaaaacataatcaaatt |
83 |
Q |
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| T |
6655774 |
attttcctatttcttctttgagcgtaccaattatcctacaaaacatatatataatatatcattttactatattaaaaacataatcaaatt |
6655863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 6681678 - 6681605
Alignment:
| Q |
10 |
tttcttctttgagtgtaccaattatcctacaaaacatatatatcattttactatgttaaaaacataatcaaatt |
83 |
Q |
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| T |
6681678 |
tttcttctttgagtgtactagtcatcctacaaaacatatatatcacttcactatgttaaaaacataatcaaatt |
6681605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 6655873 - 6655940
Alignment:
| Q |
136 |
aaaaagttaaagtaccttgtatctggcatgaaccatcttgaataagaccgtttttcttataaattgga |
203 |
Q |
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| T |
6655873 |
aaaaagttaaagtaccttgtatctggcatgaaccctctttaataagaccgtctttttgatatattgga |
6655940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 13246333 - 13246380
Alignment:
| Q |
2 |
ttttcctatttcttctttgagtgtaccaattatcctacaaaacatata |
49 |
Q |
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| T |
13246333 |
ttttcctgtgtcttctttgagtgtaccaatcatcctacaaaacatata |
13246380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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