View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3718_low_4 (Length: 510)
Name: NF3718_low_4
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_4 |
 | |
|
| [»] chr3 (22 HSPs) |
| |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 2687204 - 2686701
Alignment:
| Q |
1 |
ccttcccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687204 |
ccttcccacccttcctttcgacctcatcccagatatactgtctaggttgcaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatct |
2687105 |
T |
|
| Q |
101 |
ctgatctccgatccaaaatttgctaagaagcaccttagattgtcaaccatgcgaagcctgcacttcgtaggctacaaacaacactcccttggcaagtacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687104 |
ctgatctccgatccaaaatttgctaagaagcaccttagattgtcaaccatgcgaagcctgcacttcgtaggctacaaacaacactcccttggcaagtacg |
2687005 |
T |
|
| Q |
201 |
ttctaaagtcttacccactccactctatcctaaagaacataaacactaacttcacacagtttgagtattttgcaaacaattttgacggagattatcttgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687004 |
ttctaaagtcttacccactccactctatcctaaagaacataaacactaacttcacacagtttgagtattttgcaaacaattttgacggagattatcttgc |
2686905 |
T |
|
| Q |
301 |
tgacagtttccgatactttattgactcttgtgatggaattctttgtattggaggtagttataaaggcttagttatattgtggaacccttctttacgaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2686904 |
tgacagtttccgatactttattgactcttgtgatggaattctttgtattggaggtagttataaaggcttagttatattgtggaacccttctttacgaaaa |
2686805 |
T |
|
| Q |
401 |
tttaaagagttgcccgtttttgaaaagccaaaggtgtctactgatcaccttagaatgtcgtttggcttcggctacgattcttttaaggataattacaagg |
500 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2686804 |
tttaaagagttgcccctttttgaaaagccaaaggt---tac---tcatcttagaatgtcgtttggcttcggctacgattcttttaaggagaattacaagg |
2686711 |
T |
|
| Q |
501 |
tgattgttgt |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
2686710 |
tgattgttgt |
2686701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 510
Target Start/End: Complemental strand, 2679296 - 2678788
Alignment:
| Q |
2 |
cttcccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2679296 |
cttcccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc |
2679197 |
T |
|
| Q |
102 |
tgatctccgatccaaaatttgctaagaagcaccttagattgtcaaccatgcgaagcctgcacttcgtaggctacaaacaacactcccttggcaagtacgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||| |||| || || ||| ||| || |||| || |
|
|
| T |
2679196 |
tgatctccgatccaaaatttgctaagaagcaccttagcgtgtcaaccatccgacgtctgcacttcgtaaactacgaagaaggctcacttcgcgagtatgt |
2679097 |
T |
|
| Q |
202 |
tctaaagtcttacccactccactctatcctaaagaacataaacactaacttcacacagtttgagtattttgcaaacaattttgacggagattatcttgct |
301 |
Q |
| |
|
||| |||||||||||||||||||||| || | || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
2679096 |
tctcaagtcttacccactccactctaatttagcaagcactaacactaacttcacacggtttgagtattttgcaaacaattttgatggagattatcctcgt |
2678997 |
T |
|
| Q |
302 |
gacagtttccgatactttattgactcttgtgatggaattctttgtattggaggtagttataaaggcttagttatattgtggaacccttctttacgaaaat |
401 |
Q |
| |
|
|| ||| |||| ||||| ||||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
2678996 |
gatagtatccgttacttcattgactcttgcaatggaatcctttgtataggaggtggttataaaggcttagttatattgtggaacccctctttacgaaagt |
2678897 |
T |
|
| Q |
402 |
ttaaagagttgcccgtttttgaaaagccaaaggtgtctactgatcaccttagaatgtcgtttggcttcggctacgattcttttaaggataattacaaggt |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||| | ||||||| ||| |||||||||||||| |
|
|
| T |
2678896 |
ttaaatagttgcccgtttttgaaaagccaaaggtgtctactgatcaccttagaaagacttttggtttcggttccgattctcttactgataattacaaggt |
2678797 |
T |
|
| Q |
502 |
gattgttgt |
510 |
Q |
| |
|
|||||||| |
|
|
| T |
2678796 |
aattgttgt |
2678788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 510
Target Start/End: Complemental strand, 9497324 - 9496819
Alignment:
| Q |
2 |
cttcccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatgg-aaatct |
100 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | ||||| | |||||||| ||||||| ||||| || ||||| |||||||||||||||||||| |||||| |
|
|
| T |
9497324 |
cttcccactattcctttcgacctcataccataaatactttgtaggttaccggtgaaactcctctttgaactcagatgtgtctgcaagtcatggtaaatct |
9497225 |
T |
|
| Q |
101 |
ctgatctccgatccaaaatttgctaagaagcaccttagattgtcaaccatgcgaagcctgcacttcgtaggctacaaacaacactcccttggcaagtacg |
200 |
Q |
| |
|
|| ||||||||||||||| || |||||||||||||||| | ||||||| |||| ||| ||||||||| |||||||| || ||| ||| ||||||||| |
|
|
| T |
9497224 |
ctcatctccgatccaaaaatttctaagaagcaccttagtgtatcaaccacgcgacacctccacttcgtaagctacaaagaaggctcactttgcaagtacg |
9497125 |
T |
|
| Q |
201 |
ttctaaagtcttacccactccactctatcctaaagaacataaacactaacttcacacagtttgagtattttgcaaacaattttgacggagattatcttgc |
300 |
Q |
| |
|
|||| ||||||| |||||||||| | || ||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
9497124 |
ttctcaagtcttgtccactccactatgtcttaacgagcataaaccctaacttcacatggtttgagtattttgcaaacaattttgatggagattatcctcc |
9497025 |
T |
|
| Q |
301 |
tgacagtttccgatactttattgactcttgtgatggaattctttgtattggaggtagttataaaggcttagttatattgtggaacccttctttacgaaaa |
400 |
Q |
| |
|
|||| |||||| ||||| | |||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
9497024 |
ggacaatttccgttacttcaatgactcttgtgatggaatacttcgtattggagacggttataaaggcttaggtatattgtggaacccttccgtaagaaaa |
9496925 |
T |
|
| Q |
401 |
tttaaagagttgcccgtttttgaaaagccaaaggtgtctactgatcaccttagaatgtcgtttggcttcggctacgattcttttaaggataattacaagg |
500 |
Q |
| |
|
|||||||||||||| ||||||| |||| | | || ||||| ||| |||||| |||||||||||||||| |||||| || ||||| ||| |||| |
|
|
| T |
9496924 |
tttaaagagttgccactttttgagaagctagaagtatctac---tcaaattagaaatatgtttggcttcggctac-attcttctacggatagttataagg |
9496829 |
T |
|
| Q |
501 |
tgattgttgt |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
9496828 |
tgattgttgt |
9496819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 7432939 - 7432793
Alignment:
| Q |
5 |
cccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctga |
104 |
Q |
| |
|
||||| ||||||||||| ||||| |||| ||||| |||||| | | |||||| | ||||||||| | ||||| |||||||||| ||||| ||||||| |
|
|
| T |
7432939 |
cccactcttcctttcgatctcattacagaaatactctctaggcttccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattctctga |
7432840 |
T |
|
| Q |
105 |
tctccgatccaaaatttgctaagaagcaccttagattgtcaaccatg |
151 |
Q |
| |
|
|||| || | || ||||||||||||||| |||| |||||||||||| |
|
|
| T |
7432839 |
tctctaattccaattttgctaagaagcacattagtttgtcaaccatg |
7432793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 1891849 - 1891797
Alignment:
| Q |
60 |
tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgat |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1891849 |
tcctccttcaactccgatctgtctgcaagtcatggaattctctaatctccgat |
1891797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 3753778 - 3753896
Alignment:
| Q |
2 |
cttcccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc |
101 |
Q |
| |
|
||||| || ||||||| |||| |||| ||||| || || | |||||||| ||| || ||| |||||| | |||||||||| |||||||||||||| | || |
|
|
| T |
3753778 |
cttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttc |
3753877 |
T |
|
| Q |
102 |
tgatctccgatccaaaatt |
120 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
3753878 |
taatatccgatccaaaatt |
3753896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 996824 - 996913
Alignment:
| Q |
60 |
tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
||||||| || |||||||| | ||||||||| |||| ||||| ||||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
996824 |
tcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcatgtcaacca |
996913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 1013214 - 1013303
Alignment:
| Q |
60 |
tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
||||||| || |||||||| | ||||||||| |||| ||||| ||||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
1013214 |
tcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcatgtcaacca |
1013303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 2441239 - 2441328
Alignment:
| Q |
60 |
tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||| | ||| |||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
2441239 |
tcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcgccaagaagcacctcagcttgtcaacca |
2441328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 2651267 - 2651159
Alignment:
| Q |
5 |
cccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctga |
104 |
Q |
| |
|
||||| |||||||||||||| || | ||| || || |||||||| ||| || ||||| ||||||| ||||||||||||||| ||||||| ||||| | |
|
|
| T |
2651267 |
cccactcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctctta |
2651168 |
T |
|
| Q |
105 |
tctccgatc |
113 |
Q |
| |
|
||||||||| |
|
|
| T |
2651167 |
tctccgatc |
2651159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 3745166 - 3745282
Alignment:
| Q |
6 |
ccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgat |
105 |
Q |
| |
|
|||| ||||||| |||| |||| ||||| || | | |||| ||| |||||| ||| |||||||| |||||||||| |||||||||||||| ||||| || |
|
|
| T |
3745166 |
ccactcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaat |
3745265 |
T |
|
| Q |
106 |
ctccgatccaaaatttg |
122 |
Q |
| |
|
|| ||||| ||||||| |
|
|
| T |
3745266 |
atctgatcccaaatttg |
3745282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 510
Target Start/End: Original strand, 3745504 - 3745670
Alignment:
| Q |
341 |
ctttgtattggaggtagttataaaggcttagttatattgtggaacccttctttacgaaaatttaaagagttgcccgtttttgaaaagccaaaggtgtcta |
440 |
Q |
| |
|
|||||||||| || | |||||||||||| |||||| |||||||||| ||| | ||||||| || ||||||||| ||||| |||||||| | ||| | |
|
|
| T |
3745504 |
ctttgtattgcagatgattataaaggcttggttatactgtggaacccctctattagaaaattcaaggagttgcccctttttcaaaagccatatgtgcgca |
3745603 |
T |
|
| Q |
441 |
ctgatcaccttagaatgtcgtttggcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||| || ||||||||||||||||| || |||||| |||||||||||||||||| ||||||| |
|
|
| T |
3745604 |
---atcatattcacatgtcgtttggcttcggttataattcttcaaaggataattacaaggtggttgttgt |
3745670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 7432574 - 7432511
Alignment:
| Q |
367 |
cttagttatattgtggaacccttctttacgaaaatttaaagagttgcccgtttttgaaaagcca |
430 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
7432574 |
cttagttatattgtggaacccttcaattagaaaagttaaagagttgcccatttttgaaaggcca |
7432511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 988665 - 988754
Alignment:
| Q |
60 |
tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| | ||||| ||||| ||||| || || ||||||||||| ||||||||| |
|
|
| T |
988665 |
tcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaacca |
988754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 1003725 - 1003821
Alignment:
| Q |
42 |
ctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttag |
138 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||||| | |||||||||||||| | ||| |||||| || | |||||| ||||||||||||||| |
|
|
| T |
1003725 |
ctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatctccaataccaaatttcataagaagcaccttag |
1003821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 1021722 - 1021818
Alignment:
| Q |
42 |
ctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttag |
138 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||||| | |||||||||||||| | ||| |||||| || | |||||| ||||||||||||||| |
|
|
| T |
1021722 |
ctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatctccaataccaaatttcataagaagcaccttag |
1021818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 804082 - 803931
Alignment:
| Q |
2 |
cttcccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc |
101 |
Q |
| |
|
||||||||||||||| | || ||||| |||| || ||| | |||||| ||||| ||| | |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
804082 |
cttcccacccttcctctagatctcattgcagaaattttgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctc |
803983 |
T |
|
| Q |
102 |
tgatctccgatccaaaatttgctaagaagcaccttagattgtcaaccatgcg |
153 |
Q |
| |
|
| || | |||| | || ||||| || ||||| ||| | ||||||||| |||| |
|
|
| T |
803982 |
taatatgcgatgccaactttgccaaaaagcatcttcgtttgtcaaccgtgcg |
803931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 2441632 - 2441683
Alignment:
| Q |
459 |
cgtttggcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
2441632 |
cgtttggctttggctatgattcttttaatgataattacaaagtggttgttgt |
2441683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 3754217 - 3754268
Alignment:
| Q |
459 |
cgtttggcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||||||||||||| ||||||| |
|
|
| T |
3754217 |
cgtttggctttggctatgattctttaaacgataattacaaggtggttgttgt |
3754268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 4142571 - 4142520
Alignment:
| Q |
459 |
cgtttggcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4142571 |
cgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgt |
4142520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 4158381 - 4158330
Alignment:
| Q |
459 |
cgtttggcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4158381 |
cgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgt |
4158330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 13479243 - 13479288
Alignment:
| Q |
465 |
gcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||| |||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
13479243 |
gctttggctacgactctcttacggataattacaaggtgattgttgt |
13479288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 22672956 - 22672850
Alignment:
| Q |
43 |
taggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattg |
142 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| ||| | ||||||||||||||| ||||| ||||| |||| ||||| ||||||||||||||||| || |
|
|
| T |
22672956 |
taggttaccggtgaagctcctccttcagctccaatgcgcctgcaagtcatggaattctctaatctctgatcgcaaattcgctaagaagcaccttagcctg |
22672857 |
T |
|
| Q |
143 |
tcaacca |
149 |
Q |
| |
|
||||||| |
|
|
| T |
22672856 |
tcaacca |
22672850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 20020648 - 20020501
Alignment:
| Q |
2 |
cttcccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc |
101 |
Q |
| |
|
||||||| ||||||||||||||||| ||| || |||| |||||||| ||||| ||||||||||||| |||||||| || || |||||||| |||| |
|
|
| T |
20020648 |
cttcccattcttcctttcgacctcattgaagaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaattctc |
20020549 |
T |
|
| Q |
102 |
tgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
| ||||| |||| |||||| | |||||||||||| | ||||||||| |
|
|
| T |
20020548 |
tcatctctcatcctaaattttccaagaagcaccttcgcatgtcaacca |
20020501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 88427 - 88482
Alignment:
| Q |
81 |
tctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcacctt |
136 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | || ||||||||| |
|
|
| T |
88427 |
tctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcacctt |
88482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 51831647 - 51831702
Alignment:
| Q |
53 |
gtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctc |
108 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
51831647 |
gtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctc |
51831702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 7169476 - 7169407
Alignment:
| Q |
80 |
gtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| |||||| | |||||||||| |
|
|
| T |
7169476 |
gtctgtaagtcctggaaatctcttatctccgattcaaaattcgctaagaatcaccttcgcttgtcaacca |
7169407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 2068003 - 2067899
Alignment:
| Q |
5 |
cccacccttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctga |
104 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || |||| | || ||| |||| ||||||||||| | |||| | |||||| ||||| ||||| ||||| | |
|
|
| T |
2068003 |
cccacccttccattcgacctcattccagaaatcctgtgttggctacccgtgatattcctccttcgattccgttctgtctgtaagtcgtggaattctctaa |
2067904 |
T |
|
| Q |
105 |
tctcc |
109 |
Q |
| |
|
||||| |
|
|
| T |
2067903 |
tctcc |
2067899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 1428127 - 1428082
Alignment:
| Q |
465 |
gcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
|||||||||| |||| ||| | |||||||||||||||||||||||| |
|
|
| T |
1428127 |
gcttcggctatgattgtttaacggataattacaaggtgattgttgt |
1428082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 1428561 - 1428465
Alignment:
| Q |
53 |
gtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||| |||| || ||||| ||| | |||| ||||| || |||||||| ||||| ||||||||| |
|
|
| T |
1428561 |
gtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaacca |
1428465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 41196 - 41141
Alignment:
| Q |
53 |
gtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctc |
108 |
Q |
| |
|
|||||||||||||| ||| |||| || ||||||||||||||||| ||||| ||||| |
|
|
| T |
41196 |
gtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctc |
41141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 39298410 - 39298505
Alignment:
| Q |
41 |
tctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcacctt |
136 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| | |||| || | |||| ||||||||||| ||||| ||||| ||||| || |||||||||||| |
|
|
| T |
39298410 |
tctaggttaccagtgaagctcctccttcaacttcaatgtctcggaaagttctggaaatctctaatctcagatcccaaattcgcgaagaagcacctt |
39298505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 27754961 - 27755006
Alignment:
| Q |
104 |
atctccgatccaaaatttgctaagaagcaccttagattgtcaacca |
149 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| | |||||||||| |
|
|
| T |
27754961 |
atctccgatccaaaatttgccaagaaacaccttcgcttgtcaacca |
27755006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 510
Target Start/End: Complemental strand, 1078615 - 1078567
Alignment:
| Q |
462 |
ttggcttcggctacgattcttttaaggataattacaaggtgattgttgt |
510 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
1078615 |
ttggctttggctacgattcttttaccgagaattacaaggtggttgttgt |
1078567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 31145212 - 31145136
Alignment:
| Q |
53 |
gtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaa |
129 |
Q |
| |
|
|||||||||||| | ||| ||| ||||| |||||||||||||| ||||| || || ||||| ||||||||| |||| |
|
|
| T |
31145212 |
gtgaaattcctcatacaattccagtgtgtttgcaagtcatggaattctcttatatctgatcccaaatttgctgagaa |
31145136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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