View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3718_low_8 (Length: 389)
Name: NF3718_low_8
Description: NF3718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3718_low_8 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 26 - 372
Target Start/End: Original strand, 38229376 - 38229722
Alignment:
| Q |
26 |
ctaaattgacggatttcatatagtttagggactaaatttattattatacttacatagtttagggagaaaattggagacagggtgatagtttagggactaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38229376 |
ctaaattgacggatttcatatagtttagggactaaatttattattatacttacatagtttagggagaaaattggagacagggtgatagtttagggactaa |
38229475 |
T |
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| Q |
126 |
attgatgattttctcacctaggcaattgaagatcggtaaccagaacggaaatgaggctataaacatctttgatgtgtgcatggagatcatcctccttctc |
225 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38229476 |
attaatgattttctcacctaggcaattgaagaccggtaaccagaacggaaatgaggctataaacatctttgatgtgtacatggagatcatcctccttctc |
38229575 |
T |
|
| Q |
226 |
acaattcagaagaacccctaggcagtgaagctttacacacataaacaacagaaacagttcatcaaacttttcattcactttataaacttatagtaacatt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38229576 |
acaattcagaagaacccctaggcagtgaagctttacagacataaacaacagaaacagttcatcaaacttttcattcactttataaacttatagtaacatt |
38229675 |
T |
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| Q |
326 |
ttattttatagaggaattcgactatgtgcaaagcttaacaagtaact |
372 |
Q |
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| T |
38229676 |
ttattttatagaggaattcgactatgtgcaaagcttaacaagtaact |
38229722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38229376 - 38229325
Alignment:
| Q |
1 |
gcctctgctattaagatttttgaaactaaattgacggatttcatatagttta |
52 |
Q |
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| T |
38229376 |
gcctctgctattaagatttttgaaactaaattgacggatttcatatagttta |
38229325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 32576183 - 32576235
Alignment:
| Q |
80 |
tagtttagggagaaaattggagacagggtgatagtttagggactaaattgatg |
132 |
Q |
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| T |
32576183 |
tagtttagggactaaattggagagagactgatagtttagggactaaattgatg |
32576235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 5099518 - 5099558
Alignment:
| Q |
25 |
actaaattgacggatttcatatagtttagggactaaattta |
65 |
Q |
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| T |
5099518 |
actaaattaacggatttcatatagtttaaagactaaattta |
5099558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 35145092 - 35145131
Alignment:
| Q |
93 |
aaattggagacagggtgatagtttagggactaaattgatg |
132 |
Q |
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| T |
35145092 |
aaatttgagacagggtgatagttcagggactaaattgatg |
35145131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 8031 - 8069
Alignment:
| Q |
25 |
actaaattgacggatttcatatagtttagggactaaatt |
63 |
Q |
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| T |
8031 |
actaaattgacggattttatgtagtttagggactaaatt |
8069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 3675429 - 3675495
Alignment:
| Q |
70 |
tatacttacatagtttagggagaaaattggagacagggtgatagtttagggactaaattgatgattt |
136 |
Q |
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| T |
3675429 |
tatatttatatagtttagaggtaaagttggagagagaatgatagtttagggactaaattgatgattt |
3675495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 42403395 - 42403359
Alignment:
| Q |
93 |
aaattggagacagggtgatagtttagggactaaattg |
129 |
Q |
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| T |
42403395 |
aaattggagagagagtgatagtttagggactaaattg |
42403359 |
T |
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