View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_high_12 (Length: 397)

Name: NF3719_high_12
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_high_12
NF3719_high_12
[»] chr4 (52 HSPs)
chr4 (1-326)||(32528735-32529060)
chr4 (325-397)||(4896387-4896459)
chr4 (323-397)||(42915104-42915178)
chr4 (327-389)||(51296066-51296128)
chr4 (333-397)||(23690343-23690407)
chr4 (327-395)||(37249023-37249091)
chr4 (326-397)||(31275258-31275329)
chr4 (327-397)||(28480427-28480497)
chr4 (327-397)||(28481301-28481371)
chr4 (327-397)||(28482176-28482246)
chr4 (333-394)||(51389431-51389492)
chr4 (324-397)||(55927096-55927169)
chr4 (323-394)||(36408089-36408160)
chr4 (323-394)||(36413212-36413283)
chr4 (327-397)||(15596508-15596578)
chr4 (327-397)||(16004216-16004285)
chr4 (325-390)||(1033267-1033332)
chr4 (325-397)||(31240760-31240833)
chr4 (324-397)||(31658031-31658104)
chr4 (325-397)||(48372112-48372185)
chr4 (333-397)||(39844153-39844217)
chr4 (325-397)||(46173649-46173721)
chr4 (326-397)||(30778152-30778223)
chr4 (327-397)||(5234360-5234430)
chr4 (324-397)||(36792444-36792518)
chr4 (323-397)||(51717169-51717243)
chr4 (348-397)||(9162178-9162227)
chr4 (333-397)||(24772783-24772847)
chr4 (323-397)||(39241187-39241262)
chr4 (327-396)||(1580171-1580241)
chr4 (323-397)||(36512954-36513028)
chr4 (327-397)||(38844379-38844449)
chr4 (323-397)||(47998706-47998779)
chr4 (324-397)||(4577676-4577749)
chr4 (336-397)||(5123488-5123549)
chr4 (323-371)||(25476759-25476807)
chr4 (325-397)||(25523083-25523155)
chr4 (327-397)||(2613505-2613576)
chr4 (327-397)||(6953276-6953347)
chr4 (327-397)||(15515896-15515967)
chr4 (325-368)||(32408356-32408399)
chr4 (323-397)||(12638936-12639010)
chr4 (355-397)||(18874841-18874883)
chr4 (327-397)||(38952801-38952871)
chr4 (326-385)||(53091114-53091177)
chr4 (333-394)||(525838-525899)
chr4 (328-397)||(29384087-29384156)
chr4 (333-397)||(3286930-3286994)
chr4 (326-397)||(22257084-22257155)
chr4 (325-397)||(36444282-36444354)
chr4 (327-395)||(40409055-40409123)
chr4 (355-395)||(48148482-48148522)
[»] chr6 (20 HSPs)
chr6 (324-397)||(1897798-1897871)
chr6 (324-395)||(2582776-2582847)
chr6 (333-397)||(32457147-32457211)
chr6 (323-397)||(16336955-16337029)
chr6 (327-397)||(32853033-32853103)
chr6 (323-397)||(34021057-34021131)
chr6 (324-397)||(30906549-30906622)
chr6 (324-397)||(32253892-32253966)
chr6 (325-397)||(31517067-31517139)
chr6 (323-397)||(9954660-9954735)
chr6 (328-397)||(24752343-24752412)
chr6 (323-395)||(21857454-21857526)
chr6 (325-397)||(31480723-31480795)
chr6 (323-397)||(19713106-19713181)
chr6 (326-397)||(26378273-26378344)
chr6 (323-397)||(29383669-29383743)
chr6 (325-397)||(28548907-28548980)
chr6 (326-397)||(11785469-11785541)
chr6 (322-382)||(15722386-15722446)
chr6 (327-383)||(31255350-31255406)
[»] chr7 (39 HSPs)
chr7 (323-394)||(48866815-48866886)
chr7 (326-393)||(30180623-30180690)
chr7 (327-397)||(37856070-37856140)
chr7 (326-397)||(33684792-33684863)
chr7 (325-397)||(34348914-34348986)
chr7 (327-397)||(12141996-12142066)
chr7 (327-397)||(44894363-44894433)
chr7 (323-394)||(8792485-8792553)
chr7 (333-397)||(7077648-7077712)
chr7 (327-397)||(5978691-5978761)
chr7 (327-389)||(10591272-10591334)
chr7 (327-397)||(21752770-21752840)
chr7 (323-397)||(46651784-46651858)
chr7 (326-397)||(6353840-6353912)
chr7 (327-395)||(21858861-21858929)
chr7 (325-397)||(37351877-37351949)
chr7 (325-397)||(45607136-45607208)
chr7 (327-397)||(2790289-2790360)
chr7 (327-397)||(40717127-40717198)
chr7 (326-397)||(41966440-41966511)
chr7 (327-397)||(5378739-5378809)
chr7 (339-397)||(12102610-12102668)
chr7 (327-397)||(25887695-25887765)
chr7 (328-397)||(21839023-21839092)
chr7 (333-397)||(37392155-37392220)
chr7 (348-397)||(43025919-43025968)
chr7 (324-397)||(43445519-43445592)
chr7 (325-397)||(155868-155940)
chr7 (333-397)||(32933659-32933723)
chr7 (324-397)||(7807168-7807240)
chr7 (366-397)||(34304608-34304639)
chr7 (326-397)||(38995911-38995982)
chr7 (328-397)||(32315938-32316008)
chr7 (333-397)||(28110067-28110132)
chr7 (328-397)||(47193039-47193108)
chr7 (333-397)||(18157080-18157144)
chr7 (333-396)||(19426693-19426756)
chr7 (322-397)||(40693411-40693487)
chr7 (355-397)||(41254888-41254927)
[»] scaffold0057 (1 HSPs)
scaffold0057 (327-397)||(38991-39061)
[»] chr5 (37 HSPs)
chr5 (333-397)||(28811540-28811604)
chr5 (323-397)||(2117525-2117599)
chr5 (325-397)||(20719902-20719974)
chr5 (326-397)||(11306808-11306879)
chr5 (327-397)||(39595386-39595456)
chr5 (334-397)||(34767313-34767376)
chr5 (328-397)||(125204-125273)
chr5 (324-397)||(33567125-33567198)
chr5 (333-397)||(4834924-4834988)
chr5 (327-397)||(10232611-10232682)
chr5 (323-397)||(19127236-19127310)
chr5 (327-397)||(24431507-24431577)
chr5 (325-397)||(5130264-5130337)
chr5 (333-397)||(12661841-12661906)
chr5 (321-397)||(33243624-33243700)
chr5 (326-397)||(19376020-19376091)
chr5 (325-397)||(11767877-11767949)
chr5 (321-397)||(12718263-12718339)
chr5 (333-397)||(31284289-31284353)
chr5 (333-397)||(34381124-34381188)
chr5 (326-397)||(40566104-40566176)
chr5 (326-397)||(27392590-27392661)
chr5 (323-381)||(9403641-9403699)
chr5 (334-388)||(43482486-43482540)
chr5 (324-397)||(91327-91400)
chr5 (333-397)||(23991343-23991408)
chr5 (321-397)||(12779489-12779565)
chr5 (327-397)||(3141608-3141678)
chr5 (358-397)||(11666291-11666330)
chr5 (335-397)||(41460228-41460291)
chr5 (324-397)||(13613849-13613923)
chr5 (355-397)||(17063977-17064019)
chr5 (324-397)||(21749470-21749544)
chr5 (333-397)||(7144687-7144751)
chr5 (328-368)||(12349926-12349966)
chr5 (333-397)||(19437369-19437433)
chr5 (324-371)||(43214085-43214133)
[»] chr8 (44 HSPs)
chr8 (326-397)||(37524316-37524387)
chr8 (327-397)||(5359450-5359520)
chr8 (324-397)||(23258144-23258217)
chr8 (322-381)||(26294304-26294363)
chr8 (322-381)||(26307561-26307620)
chr8 (327-397)||(7678844-7678914)
chr8 (326-397)||(21273598-21273669)
chr8 (323-397)||(41344554-41344628)
chr8 (325-394)||(40413250-40413319)
chr8 (333-397)||(38128421-38128485)
chr8 (333-397)||(44672128-44672192)
chr8 (324-397)||(295658-295731)
chr8 (356-397)||(22767242-22767283)
chr8 (333-397)||(28927793-28927857)
chr8 (325-396)||(42543367-42543439)
chr8 (334-397)||(28473441-28473504)
chr8 (327-397)||(37101574-37101645)
chr8 (355-397)||(426213-426255)
chr8 (327-397)||(40102135-40102205)
chr8 (326-395)||(1179490-1179559)
chr8 (325-394)||(3989020-3989089)
chr8 (337-394)||(22852738-22852795)
chr8 (336-397)||(24503029-24503090)
chr8 (325-397)||(30925541-30925613)
chr8 (333-397)||(42689897-42689959)
chr8 (349-397)||(896019-896067)
chr8 (326-397)||(10344440-10344512)
chr8 (326-397)||(11223747-11223818)
chr8 (326-397)||(14029130-14029202)
chr8 (337-397)||(16011816-16011876)
chr8 (323-397)||(34474061-34474137)
chr8 (326-397)||(9738581-9738652)
chr8 (327-397)||(21648819-21648890)
chr8 (342-397)||(26871156-26871211)
chr8 (325-372)||(43403921-43403968)
chr8 (326-396)||(45101509-45101579)
chr8 (323-397)||(42941572-42941646)
chr8 (333-397)||(18538489-18538554)
chr8 (364-397)||(26507829-26507862)
chr8 (331-395)||(38576523-38576588)
chr8 (333-389)||(12668752-12668808)
chr8 (333-388)||(20284828-20284884)
chr8 (333-388)||(21071457-21071513)
chr8 (357-397)||(27836292-27836332)
[»] chr3 (46 HSPs)
chr3 (326-397)||(47849782-47849853)
chr3 (327-397)||(29706015-29706085)
chr3 (323-397)||(52727333-52727407)
chr3 (322-397)||(11173562-11173637)
chr3 (325-397)||(20380776-20380848)
chr3 (327-391)||(34733183-34733247)
chr3 (325-397)||(46473240-46473312)
chr3 (325-397)||(32687846-32687919)
chr3 (333-397)||(19418055-19418119)
chr3 (326-397)||(7231894-7231965)
chr3 (325-397)||(34271373-34271447)
chr3 (326-397)||(41111960-41112031)
chr3 (333-394)||(49130969-49131030)
chr3 (325-395)||(37303497-37303567)
chr3 (327-397)||(46315844-46315914)
chr3 (333-394)||(53715430-53715492)
chr3 (356-397)||(5188348-5188389)
chr3 (321-397)||(6126566-6126643)
chr3 (327-397)||(32457642-32457714)
chr3 (336-397)||(37215129-37215190)
chr3 (333-397)||(44127086-44127151)
chr3 (322-397)||(55344179-55344255)
chr3 (324-390)||(31997921-31997988)
chr3 (355-397)||(27198071-27198113)
chr3 (327-397)||(28300535-28300605)
chr3 (327-397)||(37302963-37303033)
chr3 (327-397)||(41957625-41957695)
chr3 (336-397)||(28269918-28269979)
chr3 (327-397)||(33007472-33007543)
chr3 (327-397)||(35272139-35272210)
chr3 (322-397)||(42475861-42475936)
chr3 (322-396)||(44365175-44365250)
chr3 (354-396)||(23553507-23553548)
chr3 (354-396)||(23553694-23553735)
chr3 (326-372)||(46953086-46953132)
chr3 (324-396)||(108544-108615)
chr3 (323-396)||(24551112-24551185)
chr3 (323-396)||(30839570-30839643)
chr3 (333-397)||(31249216-31249281)
chr3 (333-397)||(36869731-36869796)
chr3 (336-397)||(39604144-39604205)
chr3 (326-397)||(43169642-43169712)
chr3 (324-397)||(51650466-51650542)
chr3 (323-372)||(51973393-51973442)
chr3 (327-395)||(3483233-3483301)
chr3 (333-397)||(24537331-24537394)
[»] chr2 (45 HSPs)
chr2 (327-397)||(29795548-29795618)
chr2 (326-397)||(39454135-39454206)
chr2 (333-395)||(36435795-36435857)
chr2 (324-397)||(3091853-3091926)
chr2 (324-397)||(36133086-36133159)
chr2 (333-397)||(6365298-6365362)
chr2 (333-397)||(11164271-11164335)
chr2 (327-397)||(34442225-34442295)
chr2 (324-397)||(13711173-13711246)
chr2 (333-397)||(12600160-12600224)
chr2 (324-397)||(22390264-22390337)
chr2 (327-395)||(14714100-14714168)
chr2 (333-397)||(25801706-25801770)
chr2 (325-397)||(42251807-42251879)
chr2 (326-397)||(2013173-2013244)
chr2 (323-397)||(44189939-44190011)
chr2 (327-397)||(14140228-14140298)
chr2 (327-397)||(23344878-23344948)
chr2 (324-397)||(32750110-32750183)
chr2 (324-397)||(36376737-36376810)
chr2 (333-397)||(37631261-37631326)
chr2 (324-395)||(8555177-8555249)
chr2 (325-397)||(13104591-13104663)
chr2 (321-397)||(43650430-43650506)
chr2 (342-397)||(39285965-39286020)
chr2 (326-397)||(42081149-42081220)
chr2 (327-397)||(11229210-11229280)
chr2 (323-397)||(23045273-23045347)
chr2 (323-397)||(31296728-31296802)
chr2 (324-372)||(2464274-2464322)
chr2 (326-397)||(19913896-19913968)
chr2 (333-397)||(43725317-43725381)
chr2 (326-397)||(45515487-45515558)
chr2 (326-397)||(7086012-7086083)
chr2 (326-397)||(12962498-12962569)
chr2 (356-397)||(12066021-12066063)
chr2 (327-397)||(23880207-23880277)
chr2 (333-397)||(1574565-1574630)
chr2 (364-397)||(1889259-1889292)
chr2 (327-396)||(18917737-18917806)
chr2 (325-397)||(34249692-34249765)
chr2 (333-397)||(36763414-36763479)
chr2 (325-397)||(44059609-44059682)
chr2 (323-395)||(7121476-7121548)
chr2 (326-397)||(33295975-33296046)
[»] scaffold0026 (1 HSPs)
scaffold0026 (326-397)||(113737-113808)
[»] chr1 (52 HSPs)
chr1 (327-397)||(40610341-40610411)
chr1 (324-397)||(49453592-49453662)
chr1 (323-397)||(22389411-22389484)
chr1 (337-397)||(36418191-36418251)
chr1 (326-397)||(46948091-46948162)
chr1 (327-397)||(2362481-2362551)
chr1 (325-397)||(50659079-50659151)
chr1 (326-397)||(39010926-39010997)
chr1 (324-397)||(14002627-14002701)
chr1 (348-397)||(5477073-5477122)
chr1 (333-397)||(32966379-32966444)
chr1 (348-397)||(37690527-37690576)
chr1 (333-397)||(31290103-31290167)
chr1 (326-397)||(30631733-30631804)
chr1 (327-397)||(31480023-31480094)
chr1 (324-390)||(15466866-15466932)
chr1 (333-397)||(21255679-21255744)
chr1 (336-397)||(28253127-28253188)
chr1 (333-397)||(43640881-43640946)
chr1 (324-381)||(43755572-43755629)
chr1 (336-397)||(50141833-50141894)
chr1 (333-397)||(51571540-51571602)
chr1 (325-397)||(31427844-31427916)
chr1 (333-397)||(34187376-34187440)
chr1 (323-397)||(37843320-37843391)
chr1 (325-397)||(45740431-45740503)
chr1 (321-396)||(48872834-48872909)
chr1 (327-397)||(7645443-7645511)
chr1 (355-397)||(16836031-16836073)
chr1 (327-381)||(33676029-33676083)
chr1 (335-397)||(35846216-35846278)
chr1 (327-397)||(36690461-36690531)
chr1 (327-397)||(36706562-36706632)
chr1 (333-395)||(50061871-50061933)
chr1 (324-397)||(366769-366842)
chr1 (333-397)||(7503577-7503642)
chr1 (333-397)||(16987559-16987624)
chr1 (333-397)||(25302539-25302604)
chr1 (333-397)||(29294060-29294122)
chr1 (333-390)||(29300496-29300553)
chr1 (333-397)||(40605315-40605380)
chr1 (348-397)||(50436257-50436305)
chr1 (333-397)||(4604641-4604705)
chr1 (333-397)||(11460906-11460970)
chr1 (325-396)||(15061958-15062030)
chr1 (333-397)||(25061845-25061909)
chr1 (333-397)||(29264115-29264179)
chr1 (333-397)||(31817290-31817354)
chr1 (333-397)||(40595949-40596013)
chr1 (333-397)||(44730756-44730820)
chr1 (333-397)||(48872491-48872555)
chr1 (333-397)||(51339595-51339659)
[»] scaffold0076 (1 HSPs)
scaffold0076 (348-397)||(11304-11353)
[»] scaffold0036 (1 HSPs)
scaffold0036 (325-397)||(18116-18187)
[»] scaffold0115 (1 HSPs)
scaffold0115 (325-397)||(15076-15147)
[»] scaffold0002 (1 HSPs)
scaffold0002 (334-395)||(6541-6602)
[»] scaffold0508 (1 HSPs)
scaffold0508 (323-397)||(11421-11495)
[»] scaffold0501 (1 HSPs)
scaffold0501 (336-397)||(10414-10475)
[»] scaffold0018 (1 HSPs)
scaffold0018 (325-397)||(36111-36186)
[»] scaffold0054 (1 HSPs)
scaffold0054 (355-397)||(31517-31559)
[»] scaffold0003 (1 HSPs)
scaffold0003 (323-397)||(119945-120019)
[»] scaffold0154 (1 HSPs)
scaffold0154 (357-397)||(9767-9807)
[»] scaffold0009 (1 HSPs)
scaffold0009 (333-397)||(190780-190844)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 32528735 - 32529060
Alignment:
Q  1 ctcatcatcgaaatcacgcaagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaacaacatttaaataaaacattat 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528735 ctcatcatcaaaatcacgcaagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaacaacatttaaataaaacattat 32528834  T
Q  101 tggattcttccatgcggatcatgttgtgcatgtttttggtcgagctagcttgcgattaactcgctgc----taattcattcactttgtccattgaaaata 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  32528835 tggattcttccatgcggatcatgttgtgcatgtttttggtcgagctagcttgcgattaactcgctgctaattaattcattcactttgtccattgaaaata 32528934  T
Q  197 catagtaataacgtaacttaattagggtgcaagatctgtatgctgcttgacatttaaacattatttattcacacaatatttatgtctatctatatgataa 296  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528935 catagtaataacgtaac----ttagggtgcaagatctgtatgctgcttgacatttaaacattatttattcacacaatatttatgtctatctatatgataa 32529030  T
Q  297 tatgaatttgtaaatcaaccaaacataaaa 326  Q
    ||||||||||||||||||||||||||||||    
T  32529031 tatgaatttgtaaatcaaccaaacataaaa 32529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 4896387 - 4896459
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4896387 aagagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 4896459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 42915104 - 42915178
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  42915104 aaaagagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 42915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 51296066 - 51296128
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttt 389  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51296066 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaatctcttttttctctcttt 51296128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 23690407 - 23690343
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  23690407 tgatatttgaacatctatttgaaacaatttttgtgacaatatcttttttctctcttttcattggt 23690343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 37249091 - 37249023
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| ||||    
T  37249091 gagtaatgatatttgaacatctatttgaaacaacttttgagataacctcttttttctctatttttattg 37249023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 31275329 - 31275258
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  31275329 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaatttcttttttctctcttttcattggt 31275258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 28480427 - 28480497
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  28480427 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcattggt 28480497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 28481301 - 28481371
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  28481301 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcattggt 28481371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 28482176 - 28482246
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  28482176 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcattggt 28482246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 51389492 - 51389431
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||    
T  51389492 tgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcatt 51389431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 55927169 - 55927096
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||||| |||||| |||| |||||||||||  |||||| |||||||||||||||||    
T  55927169 aaagagtagtgatatttgaacatccatttgagacaatttttgtgacaatttcttttctctctcttttcattggt 55927096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 36408089 - 36408160
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  36408089 aaaagagtggtgatatttgaacaactatttgatacaacttttgtgacaatttcttttttttctcttttcatt 36408160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 36413212 - 36413283
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||||||  |||||||| ||||||||||||    
T  36413212 aaaagagtggtgatatttgaacaactatttgatacaacttttgtgacaatttcttttttttctcttttcatt 36413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 15596578 - 15596508
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||| ||||||||||||||||||| |||||||||||  |||||||||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctcatttttcattggt 15596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 16004216 - 16004285
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||| |||||| |||||| ||||||||| || ||||||||||||||||||||||    
T  16004216 gagtagtgatatttgaacatccatttgagacaactcttgtgacaa-cttttttttctctcttttcattggt 16004285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 1033332 - 1033267
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctttt 390  Q
    ||||||| ||||||||||||| | |||| ||||||||||||||||||| |||||||||||| ||||    
T  1033332 aagagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctctttttt 1033267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 31240833 - 31240760
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||| | |||||||||| ||||||| ||||||||||||||||||||||||    
T  31240833 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttctctcttttcattggt 31240760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 31658104 - 31658031
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||  |||||||||||| | |||||| ||| ||||||||||||| ||||||||||| ||||||||||||    
T  31658104 aaagagtagcgatatttgaacaaccatttgatacagcttttgtgacaacttcttttttctcacttttcattggt 31658031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 48372112 - 48372185
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| |||||| | |||| |||| |||||||| ||||||||||||||||||||||||    
T  48372112 aagagtagtgatatttgaacaactatttcatacaatttttagtgacaacttcttttttctctcttttcattggt 48372185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 39844153 - 39844217
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||| |||| ||||||||| | ||||| ||||||||||||||||| ||||||    
T  39844153 tgatatttgaacatctaattgagacaacttttttaacaacttcttttttctctctttttattggt 39844217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 46173721 - 46173649
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||| | | |||||| ||||||||||||||||  |||||||| |||||||||||||||    
T  46173721 aagagtaatgatatttgaataaccatttgatacaacttttgtgacaatttcttttttttctcttttcattggt 46173649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 30778152 - 30778223
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| |||||||| | ||||||| ||||||  ||||||||||||||||| ||||||    
T  30778152 agagtaatgatatttgaacaactatttgatataacttttatgacaatttcttttttctctctttttattggt 30778223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 5234360 - 5234430
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||  | ||||||||||||||| ||||||    
T  5234360 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaattttttttttctctctttttattggt 5234430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 36792518 - 36792444
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| | |||| | |||||||||| ||||||| |||||| |||||||||||||||||    
T  36792518 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttctctctcttttcattggt 36792444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 51717169 - 51717243
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||||||||||   || ||| ||||||| ||||||||  ||||||||||||||||||||||||    
T  51717169 aaaagagtagtgatatttgaacaatcatatgagacaacttatgtgacaatttcttttttctctcttttcattggt 51717243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 9162227 - 9162178
Alignment:
Q  348 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  9162227 tatttgatacaatttttgtgacaacttcttttttctctcttttcattggt 9162178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 24772847 - 24772783
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||| |||||| |||||| |||||||||  |||||| |||||||||| ||||||    
T  24772847 tgatatttgaacatccatttgagacaactcttgtgacaatttcttttctctctctttttattggt 24772783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 39241187 - 39241262
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||||| |||| | |||||| |||||||||| ||||||| | |||| |||||||||||||||||    
T  39241187 aaaagagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcattggt 39241262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 1580171 - 1580241
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattgg 396  Q
    ||||| ||||||||||||| | |||| | ||||||||| |||||||| | |||||||||||||||||||||    
T  1580171 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaactttttttttctctcttttcattgg 1580241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 36513028 - 36512954
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| | ||||||||||| ||| |||||| |||| | |||||||||| |||||| |||||||||| ||||||    
T  36513028 aaaagagcaatgatatttgaaaatccatttgagacaattcttgtgacaacttcttttctctctctttttattggt 36512954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 38844379 - 38844449
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||| ||||||||||||||||| | |||| |||||||||||||||||    
T  38844379 gagtaatgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcattggt 38844449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 47998779 - 47998706
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||||||||||   |||||| ||||||||||||| || || |||||||| |||||||||||||    
T  47998779 aaaagagtagtgatatttgaacaatcatttgatacaacttttgtgataa-cttttttttctttcttttcattggt 47998706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 4577749 - 4577676
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| || ||||  |||||||||| ||||||||  || | ||||||||||||||||    
T  4577749 aaagagtaatgatatttgaacaactttttgctacaacttttgggacaaccttgttgtgctctcttttcattggt 4577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 5123488 - 5123549
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| | || ||| ||||||||||||||||| | ||||||||||||||| ||||||    
T  5123488 tatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttaattggt 5123549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 25476807 - 25476759
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaa 371  Q
    ||||||||| ||||||||||||||| |||||| ||||||| ||||||||    
T  25476807 aaaagagtaatgatatttgaacatccatttgagacaacttctgtgacaa 25476759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 25523083 - 25523155
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| || |||||||||| | || ||| ||||||||||||| ||| | |||| |||||||||||||||||    
T  25523083 aagagtagtgttatttgaacaaccatatgagacaacttttgtgataacttattttctctctcttttcattggt 25523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 2613505 - 2613576
Alignment:
Q  327 gagtattgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||| ||  ||| |||||||||| ||||||    
T  2613505 gagtaatgatatttgaacaaccatttgataacaacttttgtgacaatctactttctctctcttttaattggt 2613576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 6953276 - 6953347
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | ||||   |||||||||| ||||||| |||||| |||||||||||||||||    
T  6953276 gagtagtgatatttgaacaaccatttcttacaacttttggtgacaacttcttttctctctcttttcattggt 6953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 15515967 - 15515896
Alignment:
Q  327 gagtattgatatttgaacatctatttg-aaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||| |||||||||||||| ||||||||||  |||||||||  |||||||| ||||| ||||||    
T  15515967 gagtagtgatatatgaacatctatttgaaaacaactttgatgacaaccttgtttttctcactttttattggt 15515896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 32408356 - 32408399
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtga 368  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||    
T  32408356 aagagtagtgatatttgaacatcaatttgaaataacttttgtga 32408399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 12639010 - 12638936
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| | ||||||||||||| |||||||  ||||| | | |||||||||   ||||||||||||||||||||    
T  12639010 aaaagagaaatgatatttgaacaactatttgttacaacctatttgacaaccttcattttctctcttttcattggt 12638936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 18874841 - 18874883
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| |||||||||| |||||||||||| ||||||||    
T  18874841 aacaacttttatgacaacctcctttttctctcttctcattggt 18874883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 38952871 - 38952801
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||| ||||  ||||||| |||| |||||||| ||  |||||||||||| |||||||||||    
T  38952871 gagtagtgatatttaaacaattatttgatacaatttttgtgataatttcttttttctcttttttcattggt 38952801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 53091114 - 53091177
Alignment:
Q  326 agagtattgatatttgaaca----tctatttgaaacaacttttgtgacaacctcttttttctct 385  Q
    |||||| |||||||||||||    || |||||| ||||||||||||||||| ||||||||||||    
T  53091114 agagtagtgatatttgaacaaccatccatttgatacaacttttgtgacaacttcttttttctct 53091177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 525899 - 525838
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||| |||||||  ||||||| ||||||||||||||||  | |||| ||||||||||||||    
T  525899 tgataattgaacaattatttgagacaacttttgtgacaattttttttctctctcttttcatt 525838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 29384087 - 29384156
Alignment:
Q  328 agtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| |||||||||||||   || ||| |||||| |||||||||| ||| |||||||| |||||||||||    
T  29384087 agtagtgatatttgaacaatcatatgatacaactcttgtgacaacttctattttctcttttttcattggt 29384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 3286994 - 3286930
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | ||||||||||||||||  | |||||||||  |||||||||||    
T  3286994 tgatatttgaacaaccatttcacacaacttttgtgacaatttattttttctcctttttcattggt 3286930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 22257084 - 22257155
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||| | ||||||||| ||||||| || |||| |||||||||||||||||    
T  22257084 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaa-cttttttctctctcttttcattggt 22257155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 36444282 - 36444354
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||||||||   || ||| |||| | |||||||||| ||| |||||||| |||||||||||    
T  36444282 aagagtagtgatatttgaacaatcatatgatacaattcttgtgacaacttctattttctcttttttcattggt 36444354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 40409055 - 40409123
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||| ||||||||||||| |||||| |  |||||||||  ||||| ||||||||||| ||||| ||||    
T  40409055 gagtagtgatatttgaacaactattttagccaacttttggtacaacttcttttttctcactttttattg 40409123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 48148522 - 48148482
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||||||| ||| |||||| |||||||||||||||||||    
T  48148522 aacaacttttatgataacctcatttttctctcttttcattg 48148482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 1897871 - 1897798
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1897871 aaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 1897798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 2582847 - 2582776
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2582847 aaagagtggtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 2582776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 32457147 - 32457211
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  32457147 tgatatttaaacatctatttgaaacaaattttgtgataacctcttttttctcttttttcattggt 32457211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 16336955 - 16337029
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||||| |||||| |||||| |||||||||| ||| || |||||||||||||||||    
T  16336955 aaaagagtaatgatatttgaacatccatttgagacaactcttgtgacaacttctattctctctcttttcattggt 16337029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 32853033 - 32853103
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| |||| |||||||||||| |||||||||||| |||||||||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaatttttgtgacaacttcttttttctcttttttcattggt 32853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 34021057 - 34021131
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||||| |||||| ||||||||| | ||||| |||||| |||||||||||||||||    
T  34021057 aaaagagtagtgatatttgaacatccatttgagacaacttttttaacaacttcttttctctctcttttcattggt 34021131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 30906549 - 30906622
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||||| ||||||||||||| || ||||||  |||||| |||||||||| ||||||    
T  30906549 aaagagtagtgatatttgaacatccatttgaaacaactcttatgacaatttcttttctctctctttttattggt 30906622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 32253966 - 32253892
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttt-tctctcttttcattggt 397  Q
    |||||||| ||||||||||||| |||||||  ||||||||||||||||  | ||||| |||||||||||||||||    
T  32253966 aaagagtagtgatatttgaacaactatttggtacaacttttgtgacaatttttttttctctctcttttcattggt 32253892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 31517067 - 31517139
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| || |||||||||| |||  ||| ||||||| ||||||||| ||||||||||||||||| ||||||    
T  31517067 aagagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttcttttttctctctttttattggt 31517139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 9954735 - 9954660
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| | ||||||||||||| | |||| | |||||||||| ||||||| |||| |||||||||||||||||||    
T  9954735 aaaagaggagtgatatttgaacaaccatttaatacaacttttggtgacaacttcttctttctctcttttcattggt 9954660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 24752412 - 24752343
Alignment:
Q  328 agtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  24752412 agtagtgatatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 24752343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 21857454 - 21857526
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||| |||| ||||||||||| | |||| ||| |||| |||| ||||||| ||||||||||||||||| ||||    
T  21857454 aaaatagtagtgatatttgaataactatatgagacaatttttatgacaacttcttttttctctctttttattg 21857526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 31480723 - 31480795
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| || |||||||||| |||  ||| |||| || ||||||||| ||||||||||||||||| ||||||    
T  31480723 aagagtagtgttatttgaacaactaaatgagacaatttatgtgacaacttcttttttctctctttttattggt 31480795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 19713181 - 19713106
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| || ||| | ||||||||||| ||||||||  || | ||||||||||||||||    
T  19713181 aaaagagtaatgatatttgaacaacttttttacaacaacttttgggacaaccttgttgtgctctcttttcattggt 19713106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 26378273 - 26378344
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||| | ||||||||||  ||||| |||||||||||  |||||||||||    
T  26378273 agagtagtgatatttgaacaaccattttagacaacttttgatacaacttcttttttctcatttttcattggt 26378344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 29383743 - 29383669
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| || ||||||||||   |  ||| |||| || ||||||||| ||||||||||||||||||||||||    
T  29383743 aaaagagtagtgttatttgaacaagcaaatgagacaatttatgtgacaacttcttttttctctcttttcattggt 29383669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 28548907 - 28548980
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| || |||||||||| | |||| | |||||||||| ||||||| | |||||| |||||||||||||||    
T  28548907 aagagtaatgttatttgaacaaccattttatacaacttttggtgacaactttttttttttctcttttcattggt 28548980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 11785541 - 11785469
Alignment:
Q  326 agagtattgatatttgaacatct-atttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| || |||| | ||||||| ||||||||| | |||||||||| |||| ||||||    
T  11785541 agagtagtgatatttgaacaactcattttagacaacttatgtgacaacttgttttttctctttttttattggt 11785469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 15722386 - 15722446
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttc 382  Q
    |||||||||||||||||||||||| |||||| | | ||||||  ||||||| | |||||||    
T  15722386 taaaagagtattgatatttgaacaactattttagataactttaatgacaactttttttttc 15722446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 31255350 - 31255406
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttct 383  Q
    |||||||  ||||||| || | |||||||||||||||| ||||||| ||||||||||    
T  31255350 gagtatttttatttgatcaaccatttgaaacaacttttatgacaacttcttttttct 31255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 48866815 - 48866886
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48866815 aaaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 48866886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 30180690 - 30180623
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcat 393  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30180690 agagtagtgatatttgaacatctatttgaaacaatttttgcgacaacctcttttttctctcttttcat 30180623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 37856070 - 37856140
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  37856070 gagtagtgatatttaaacatctatttgaaacaacttttgtgataatctcttttttctctcttttcattggt 37856140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 33684863 - 33684792
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| || |||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  33684863 agagtagtgttatttgaacaactatatgaaacaacttttgtgacaacttcttttttctatcttttcattggt 33684792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 34348914 - 34348986
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||||||||||||||| | ||||||||| | ||||| |||||| |||||||||||||||||    
T  34348914 aagagtagtgatatttgaacatctatttcatacaacttttttaacaacttcttttctctctcttttcattggt 34348986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 12142066 - 12141996
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||| | |||||||| |||||||||||||    
T  12142066 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaactttttttttctttcttttcattggt 12141996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 44894363 - 44894433
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||| |||||| | || |||||||||||| |||||| |||||||||||||||||    
T  44894363 gagtagtgatatttgaacatccatttgagataatttttgtgacaacttcttttatctctcttttcattggt 44894433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 8792485 - 8792553
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||| ||||||||||||| | |||||| ||||||||||||||||   ||||||||||||||||||||    
T  8792485 aaaagagtaatgatatttgaacaaccatttgatacaacttttgtgacaa---cttttttctctcttttcatt 8792553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 7077648 - 7077712
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||| ||||||||||||||||||| | ||||| ||| ||||||||||||    
T  7077648 tgatatttgaacaactattttaaacaacttttgtgacaacttttttttcctcacttttcattggt 7077712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 5978761 - 5978691
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | || ||| |||||| |||||||||| ||| ||||||||||||||||||||    
T  5978761 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaacttctattttctctcttttcattggt 5978691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 10591334 - 10591272
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttt 389  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||||| ||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaacttttgtgacaacttcttttttctcacttt 10591272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 21752840 - 21752770
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||||||||||||||||||||  | ||||||||||||||||||||||    
T  21752840 gagtagtgttatttgaacaacaatatgaaacaacttttgtgacaatttattttttctctcttttcattggt 21752770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 46651858 - 46651784
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| | || ||| |||| | |||||||||| ||| ||||||||||||||||||||    
T  46651858 aaaagagtagtgatatttgaacaaccatatgatacaattcttgtgacaacttctattttctctcttttcattggt 46651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 6353912 - 6353840
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctc-ttttttctctcttttcattggt 397  Q
    |||||| ||||||||||| | |||||||| ||||||||||||||||  || |||||||||| |||||||||||    
T  6353912 agagtagtgatatttgaaaaactatttgatacaacttttgtgacaatttctttttttctcttttttcattggt 6353840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 21858929 - 21858861
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||| ||||||||||||| | |||| ||||||||||||||| ||| |||||||| || ||||||||||    
T  21858929 gagtagtgatatttgaacaaccattttaaacaacttttgtgataacttcttttttttcacttttcattg 21858861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 37351877 - 37351949
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||||||||   |||||| | ||||||||||||||  ||||||||||||||||| ||||||    
T  37351877 aagagtagtgatatttgaacaatcatttgatataacttttgtgacaatttcttttttctctctttttattggt 37351949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 45607208 - 45607136
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| |||||| | | ||||||||  ||||| ||||||||||| ||||||||||||    
T  45607208 aagagtagtgatatttgaacaactattttagataacttttggtacaacttcttttttctcacttttcattggt 45607136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 2790360 - 2790289
Alignment:
Q  327 gagtattgatatttgaacatct-atttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| || |||| | ||||||| ||||||||| |||||| |||||||||||||||||    
T  2790360 gagtagtgatatttgaacaactcattttagacaacttatgtgacaacttcttttctctctcttttcattggt 2790289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 40717127 - 40717198
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||| | ||||||||| |||||||| ||||||||||||||||| ||||||    
T  40717127 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaacttcttttttctctctttttattggt 40717198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 41966511 - 41966440
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| |||||| |||||| |||| ||||||| |||||||||||  |||| ||||||    
T  41966511 agagtagtgatatttgaacaactattttaaacaatttttatgacaacttcttttttctcagtttttattggt 41966440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 5378809 - 5378739
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||| |||||| |||||| ||||||||| | ||||  |||||| |||||||||||||||||    
T  5378809 gagtagtgatatttaaacatccatttgagacaacttttttaacaatttcttttctctctcttttcattggt 5378739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 12102610 - 12102668
Alignment:
Q  339 ttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| | |||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  12102610 ttgaacaaccatttcagacaacttttgtgacaacttattttttctctcttttcattggt 12102668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 25887765 - 25887695
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  25887765 gagtagtgatatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 25887695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 21839023 - 21839092
Alignment:
Q  328 agtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||||||||||| |||||||| |||| |||||| ||||  | |||||||||| |||||||||||    
T  21839023 agtagtgatatttgaacaactatttgatacaatttttgtaacaatttattttttctcttttttcattggt 21839092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 37392220 - 37392155
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||  |||||||||| |||||||||||||||||||||    
T  37392220 tgatatttgaacaaccatttgctaacaactttcatgacaacctcatttttctctcttttcattggt 37392155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 43025968 - 43025919
Alignment:
Q  348 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||| ||||    
T  43025968 tatttgatacaacttttgtaacaacttcttttttctctcttttcaatggt 43025919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 43445592 - 43445519
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| |||||||||||||   |||||| |||| |||||||||||  |||||||||| |||||| ||||||    
T  43445592 aaagagtagtgatatttgaacaatcatttgatacaatttttgtgacaatttcttttttctttctttttattggt 43445519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 155868 - 155940
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||  ||||||||||||    
T  155868 aagagtagtgatatttgaacaaccattttagacaacttttgatacaacttcttttttcttacttttcattggt 155940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 32933723 - 32933659
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||||||  ||||||| ||||||||||||||||  |||||||| ||| |||| ||||||    
T  32933723 tgatatttgaacaattatttgatacaacttttgtgacaatttcttttttttctatttttattggt 32933659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 7807240 - 7807168
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| | |||| | |||||||||| ||||||| ||  ||||||||||||||||||||    
T  7807240 aaagagtagtgatatttgaacaaccatttcatacaacttttgatgacaacttc--ttttctctcttttcattggt 7807168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 397
Target Start/End: Original strand, 34304608 - 34304639
Alignment:
Q  366 tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||||||||||||||||    
T  34304608 tgacaacctcttttttctctcttttcattggt 34304639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 38995911 - 38995982
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||||   || || |||||||| ||||||||  |||||||| ||| |||||||||||    
T  38995911 agagtattgatatttgaacaatcatatgtaacaacttatgtgacaatttcttttttttcttttttcattggt 38995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 32316008 - 32315938
Alignment:
Q  328 agtattgatatttgaacatctatttgaa-acaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||||||||||| ||||||||  ||||||||||||||||| |  |||||||||||| | ||||||    
T  32316008 agtaatgatatttgaacaactatttgacgacaacttttgtgacaacattgtttttctctcttcttattggt 32315938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 28110132 - 28110067
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||| |||| ||||| ||| |||||||||||||||||    
T  28110132 tgatatttgaacaaccatttgctaacaacttttatgacgacctcatttctctctcttttcattggt 28110067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 47193108 - 47193039
Alignment:
Q  328 agtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||||||||||| | |||| | | ||||||||  ||||| ||||||||||| ||||||||||||    
T  47193108 agtagtgatatttgaacaaccattttagataacttttggtacaacttcttttttctcacttttcattggt 47193039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 18157080 - 18157144
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||||  ||||| | | |||||||||   ||||||||||||||||||||    
T  18157080 tgatatttgaacaactatttggtacaacctatttgacaaccttccttttctctcttttcattggt 18157144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 19426756 - 19426693
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattgg 396  Q
    ||||||||||||| | |||| | |||||||||| ||||||| | |||||||||||||||||||||    
T  19426756 tgatatttgaacaaccatttcatacaacttttggtgacaactt-ttttttctctcttttcattgg 19426693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 40693411 - 40693487
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| | ||||||||||||| | || ||  |||||||| | |||||||||| |||||||||||| ||||||||    
T  40693411 taaaagagcaatgatatttgaacaaccatgtgctaacaacttctatgacaacctcctttttctctcttctcattggt 40693487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 41254927 - 41254888
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||   ||||||||||||||||||||||    
T  41254927 aacaacttttgtgacaac---ttttttctctcttttcattggt 41254888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 39061 - 38991
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39061 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaatctcttttttctctcttttcattggt 38991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 28811604 - 28811540
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28811604 tgatatttgaatatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 28811540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 2117525 - 2117599
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  2117525 aaaagagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctcttttttcattggt 2117599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 20719902 - 20719974
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  20719902 aagagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcattggt 20719974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 11306879 - 11306808
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  11306879 agagtagtgatatttgaacaactatttgatacaacttttgagacaacttcttttttctctcttttcattggt 11306808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 39595456 - 39595386
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  39595456 gagtaatgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 39595386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 34767313 - 34767376
Alignment:
Q  334 gatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  34767313 gatatttgaacatctatttgagacaactcttgtgacaacttcttttctctctcttttcattggt 34767376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 125273 - 125204
Alignment:
Q  328 agtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||||||||||| | |||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  125273 agtagtgatatttgaacaaccatttgatacaacttttgcgacaacttcttttttctctcttttcattggt 125204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 33567125 - 33567198
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| |||||| |||||| | |||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  33567125 aaagagtagtgatatatgaacaaccatttgatacaacttttgtgacaatttcttttttctctcttttcattggt 33567198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 4834924 - 4834988
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||||||||||||||| |||||| |||||| ||| |||||| |||||||||||||||||    
T  4834924 tgatatttgaacatctatttgagacaactcttgtgataacttcttttctctctcttttcattggt 4834988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 10232682 - 10232611
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||| | |||||||||| ||||||| ||||||||||||||||||||||||    
T  10232682 gagtagtgatatttgaacaactattttatacaacttttggtgacaacttcttttttctctcttttcattggt 10232611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 19127310 - 19127236
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| | |||| |||||||||||| |||||| |||||||||||  |||||||||||    
T  19127310 aaaagagtagtgatatttgaacaaccattttaaacaacttttgcgacaacttcttttttctcatttttcattggt 19127236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 24431507 - 24431577
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||||| |||||| |||||||||| || |||||||||||||||||||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctctcttttcattggt 24431577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 5130264 - 5130337
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| |||||| | |||| |||| |||||||| ||||||||||||||||||||||||    
T  5130264 aagagtagtgatatttgaacaactatttcatacaattttttgtgacaacttcttttttctctcttttcattggt 5130337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 12661841 - 12661906
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||| | |||||||||| ||||||| ||||||||||||||||||||||||    
T  12661841 tgatatttgaacaactatttcatacaacttttggtgacaacttcttttttctctcttttcattggt 12661906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 33243624 - 33243700
Alignment:
Q  321 ataaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||| ||||||||||||| | |||| | | ||||||||||||||  | ||||||||||||||||||||||    
T  33243624 ataaaagagtaatgatatttgaacaaccatttcagataacttttgtgacaatttattttttctctcttttcattggt 33243700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 19376020 - 19376091
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| || |||||||||| |||  ||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  19376020 agagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttcttttttctctcttttcattggt 19376091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 11767877 - 11767949
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  11767877 aagagtagtgatatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 11767949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 12718263 - 12718339
Alignment:
Q  321 ataaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||| ||||||||||||| | ||||  ||||| |||||||||||| |||||| ||| |||||||||||||    
T  12718263 ataaatgagtagtgatatttgaacaaccattttcaacaatttttgtgacaacttcttttctctttcttttcattggt 12718339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 31284289 - 31284353
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | |||||||||| |||||| |||||| |||||||||||||||||    
T  31284289 tgatatttgaacaaccatttcatacaacttttgcgacaacttcttttctctctcttttcattggt 31284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 34381188 - 34381124
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| | || |||||||||||| || |||||||||||||||||||||    
T  34381188 tgatatttgaacaaccatttgatataatttttgtgacaacttcgtttttctctcttttcattggt 34381124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 40566104 - 40566176
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctt-ttttctctcttttcattggt 397  Q
    |||||| ||||||||||||||| |||||| ||||||||| | ||||| | || ||||||||||||||||||||    
T  40566104 agagtagtgatatttgaacatccatttgagacaacttttttaacaactttttattttctctcttttcattggt 40566176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 27392590 - 27392661
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| || |||||||||| | || ||| ||||||||||||||||| | |||||| |||||||||||||||    
T  27392590 agagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttttctcttttcattggt 27392661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 9403699 - 9403641
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctttttt 381  Q
    ||||||||| |||||||| |||| | |||||| ||||||||||||||||| ||||||||    
T  9403699 aaaagagtagtgatatttaaacaaccatttgatacaacttttgtgacaacttctttttt 9403641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 43482540 - 43482486
Alignment:
Q  334 gatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctt 388  Q
    |||||||||||| |||||||| |||| |||||||||||| |||||||||| ||||    
T  43482540 gatatttgaacaactatttgatacaatttttgtgacaacttcttttttctttctt 43482486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 91400 - 91327
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| | ||||||||||||| | |||||| ||||| | | ||||||||| | ||||||||||||||||||||    
T  91400 aaagagcaatgatatttgaacaaccatttgatacaacctatttgacaacctttcttttctctcttttcattggt 91327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 23991408 - 23991343
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||| ||| |||||| |||||||||||||||||||||    
T  23991408 tgatatttgaacaaccatttgctaacaacttttttgagaacctcatttttctctcttttcattggt 23991343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 12779489 - 12779565
Alignment:
Q  321 ataaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||| ||||||||||| | | ||||  ||||| |||||||||||| |||||| ||| |||||||||||||    
T  12779489 ataaatgagtagtgatatttgaataaccattttcaacaatttttgtgacaacttcttttctctttcttttcattggt 12779565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 3141678 - 3141608
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||| | |||||||||| ||||||| | ||||||||||||||||||||||    
T  3141678 gagtagtgatatttgaacaaccatttcatacaacttttgatgacaactt-ttttttctctcttttcattggt 3141608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 397
Target Start/End: Complemental strand, 11666330 - 11666291
Alignment:
Q  358 aacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  11666330 aacttttgtaacaacttcttttttctctcttttcattggt 11666291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 41460291 - 41460228
Alignment:
Q  335 atatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||| | |||||  |||||||||  |||||||||| |||||||||||||||||||||    
T  41460291 atatttgaacaaccatttgctaacaactttcatgacaacctcatttttctctcttttcattggt 41460228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 13613849 - 13613923
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||||||   |||| | |||||||||| ||||||  ||||||||||||||||||||||||    
T  13613849 aaagaatagtgatatttgaacaatcatttcatacaacttttggtgacaatttcttttttctctcttttcattggt 13613923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 17064019 - 17063977
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| |||||||||| ||| |||||||||||||||||    
T  17064019 aacaacttttatgacaacctcatttctctctcttttcattggt 17063977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 21749544 - 21749470
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| | |||| | | || ||||| ||||||  ||||||||||||||||||||||||    
T  21749544 aaagagtagtgatatttgaacaaccattttatataatttttggtgacaatttcttttttctctcttttcattggt 21749470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 7144751 - 7144687
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| || | |||||| ||||| ||| |||||||||  |||||||||||||| ||||||    
T  7144751 tgatatttgagcaaccatttgatacaacctttttgacaaccttctttttctctctttttattggt 7144687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 12349966 - 12349926
Alignment:
Q  328 agtattgatatttgaacatctatttgaaacaacttttgtga 368  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  12349966 agtagtgatatttgaacaactatttgatacaacttttgtga 12349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 19437433 - 19437369
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| ||||||   ||||| ||| ||||||||| | ||||||||||||| ||||||    
T  19437433 tgatatttgaacaactatttagtacaacatttttgacaacctttcttttctctcttttgattggt 19437369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 43214133 - 43214085
Alignment:
Q  324 aaagagtattgatatttgaacatcta-tttgaaacaacttttgtgacaa 371  Q
    |||||| | ||||||||||||||||| |||| |||||||||||||||||    
T  43214133 aaagagaaatgatatttgaacatctattttgcaacaacttttgtgacaa 43214085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 37524316 - 37524387
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  37524316 agagtagtgatatttgaacatctatttgaaataacctttgtgacaacctcttttttctctcttttcattggt 37524387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 5359520 - 5359450
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  5359520 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaatctcttttttctctctttttattggt 5359450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 23258217 - 23258144
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  23258217 aaagagtagtgatatttgaacaaccatttgaaacaatttttgtgacaacttcttttttctctcttttcattggt 23258144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 26294363 - 26294304
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctttttt 381  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26294363 taaaagagtagtgatatttgaacatatatttgaaacaacttttgtgacaacctctttttt 26294304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 26307620 - 26307561
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctttttt 381  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26307620 taaaagagtagtgatatttgaacatatatttgaaacaacttttgtgacaacctctttttt 26307561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 7678914 - 7678844
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  7678914 gagtaatgatatttgaacaactatttgatacaacttttgtaacaacttcttttttctctcttttcattggt 7678844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 21273598 - 21273669
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| |||||| | ||||||||||||||||| | | ||||||||||||||||||||    
T  21273598 agagtagtgatatttgaacaactatttcatacaacttttgtgacaacttttcttttctctcttttcattggt 21273669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 41344554 - 41344628
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||||| |||||| |||||| || ||| ||| |||||| |||||||||||||||||    
T  41344554 aaaagagtagtgatatttgaacatccatttgagacaactcttatgataacttcttttctctctcttttcattggt 41344628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 40413250 - 40413319
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||| ||||||||||||| | |||||| ||||||||| ||| ||| |||||||||||||||||||||    
T  40413250 aagagtagtgatatttgaacaaccatttgatacaacttttatgataacttcttttttctctcttttcatt 40413319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 38128421 - 38128485
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| |||||| |||||||||||| ||||||||||| ||||||||||||    
T  38128421 tgatatttgaacaaccattttaaacaatttttgtgacaacttcttttttctcacttttcattggt 38128485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 44672128 - 44672192
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||||||  ||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  44672128 tgatatttgaacaattatttgatacaacttttgtgacacattcttttttctctcttttcattggt 44672192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 295731 - 295658
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| || |||||||||| |||||||| | ||||||||||||||  | |||||||||| |||||||||||    
T  295731 aaagagtagtgttatttgaacaactatttgagataacttttgtgacaatttattttttctctattttcattggt 295658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 22767283 - 22767242
Alignment:
Q  356 acaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  22767283 acaacttttgtgacaacttcttttttctctcttttcattggt 22767242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 28927857 - 28927793
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| | || |||||||||||| |||||| |||||||||||||||||    
T  28927857 tgatatttgaacaaccatttgataaaatttttgtgacaacttcttttctctctcttttcattggt 28927793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 42543367 - 42543439
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattgg 396  Q
    ||||||| ||||| ||||||| | |||| | |||||||||| ||||||| |||||||||||||||||||||||    
T  42543367 aagagtagtgataattgaacaaccatttcatacaacttttggtgacaacttcttttttctctcttttcattgg 42543439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 28473441 - 28473504
Alignment:
Q  334 gatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| || |||| |||| |||| | ||||| ||||||||||||||||||||||||    
T  28473441 gatatttgaacatttaattgagacaatttttttaacaacttcttttttctctcttttcattggt 28473504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 37101574 - 37101645
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||| | |||| |||| |||||||| ||||||||||||||||||||||||    
T  37101574 gagtagtgatatttgaacaaccatttcatacaatttttcgtgacaacttcttttttctctcttttcattggt 37101645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 426255 - 426213
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  426255 aacaacttatgtgacaacttcttttttctctcttttcattggt 426213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 40102205 - 40102135
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||| ||||||||||||||||| | |||| |||||||||||||||||    
T  40102205 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcattggt 40102135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 1179559 - 1179490
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||| |||||||| |||| |||||||| | ||||||||||||||| | |||||| ||| |||||||||    
T  1179559 agagtagtgatatttaaacaactatttgatataacttttgtgacaactttttttttttcttttttcattg 1179490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 3989089 - 3989020
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||| || |||||||||| | |  ||| ||||||| ||||||||| |||||||||||||||||||||    
T  3989089 aagagtagtgttatttgaacaaccaaatgagacaacttatgtgacaacttcttttttctctcttttcatt 3989020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 22852738 - 22852795
Alignment:
Q  337 atttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||| |||||| |||||| |||||||||||  ||||||||||| |||||||||    
T  22852738 atttgaacaactattttaaacaatttttgtgacaatttcttttttctcacttttcatt 22852795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 24503090 - 24503029
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| | | |||||| ||||||||| ||||||| || |||||||||||||||||||||    
T  24503090 tatttgaataaccatttgagacaacttttatgacaacttcatttttctctcttttcattggt 24503029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 30925541 - 30925613
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||| | |||||||||| ||||||| | ||||||||||||||||||||||    
T  30925541 aagagtagtgatatttgaacaaccattttatacaacttttggtgacaactt-ttttttctctcttttcattggt 30925613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 42689959 - 42689897
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||||  |  |||||||||||||  ||||||||||||||||||||||||    
T  42689959 tgatatttgaacaactatttgtta--acttttgtgacaatttcttttttctctcttttcattggt 42689897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 896067 - 896019
Alignment:
Q  349 atttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||| | ||||| ||||||||||||||||||||||||    
T  896067 atttgagacaacttttttaacaacttcttttttctctcttttcattggt 896019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 10344512 - 10344440
Alignment:
Q  326 agagtattgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| |||||| || |||||||||||| |||||||||| |||||||||  ||||||| |||||| ||||||    
T  10344512 agagtagtgatatatgtacatctatttgataacaacttttatgacaaccttgtttttctttctttttattggt 10344440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 11223747 - 11223818
Alignment:
Q  326 agagtattgatatttgaaca-tctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| ||| ||||| ||||||||||  ||||| ||||||||||| ||||||||||||    
T  11223747 agagtagtgatatttgaacaatct-tttgagacaacttttggtacaacttcttttttctcacttttcattggt 11223818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 14029130 - 14029202
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||| |||||||| |||| | |||||| |||||||||| ||||||| | |||| |||||||||||||||||    
T  14029130 agagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcattggt 14029202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 16011816 - 16011876
Alignment:
Q  337 atttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||| | | || |||||||||||  ||||||||||||||||||||||||    
T  16011816 atttgaacaactatttaatataatttttgtgacaatttcttttttctctcttttcattggt 16011876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 34474137 - 34474061
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttt-tctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| | |||| | ||||||||| |||||||| ||||||| ||||| |||||||||||    
T  34474137 aaaagagtaatgatatttgaacaaccatttcatacaacttttggtgacaacttctttttctctcttttttcattggt 34474061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 9738581 - 9738652
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||  |||||||||| |||| ||| | ||||||||||||||  |||||||||||| |||| ||||||    
T  9738581 agagtattattatttgaacagctatatgagataacttttgtgacaatttcttttttctctttttttattggt 9738652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 21648819 - 21648890
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||| |||| | |||||| |||||||||| ||||||| | |||| |||||||||||||||||    
T  21648819 gagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcattggt 21648890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 26871211 - 26871156
Alignment:
Q  342 aacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| |||||| |||||| |||||||||  |||||| |||||||||||||||||    
T  26871211 aacatccatttgagacaactcttgtgacaatttcttttctctctcttttcattggt 26871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 43403968 - 43403921
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaac 372  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||||||||    
T  43403968 aagagtagtgatatttgaacaactatttgagacaactttcgtgacaac 43403921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 45101579 - 45101509
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattgg 396  Q
    |||||| ||||||||||||| | |||| | |||||||||| ||||||| | |||||||||||||||||||||    
T  45101579 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt-ttttttctctcttttcattgg 45101509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 42941572 - 42941646
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| |||| |||||||||||||   |||||||| |  |||||||||||| ||||||||||| ||||| ||||||    
T  42941572 aaaaaagtagtgatatttgaacaataatttgaaatattttttgtgacaacttcttttttctcactttttattggt 42941646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 18538554 - 18538489
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctc-ttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||||   |||||||||||||||| || ||||||| ||||||| ||||||    
T  18538554 tgatatttgaacaactatttggttcaacttttgtgacaacttctttttttccctctttttattggt 18538489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 26507829 - 26507862
Alignment:
Q  364 tgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||||||||||||||    
T  26507829 tgtgacaacttcttttttctctcttttcattggt 26507862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 38576588 - 38576523
Alignment:
Q  331 attgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattg 395  Q
    ||||||||||||||| | |||| ||||||||||| |||||||| | |||| | |||||||||||||    
T  38576588 attgatatttgaacaaccatttcaaacaacttttggtgacaacttattttctttctcttttcattg 38576523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 12668752 - 12668808
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttt 389  Q
    ||||||||||||| ||| |||||| ||||||||||||||| |   ||||||||||||    
T  12668752 tgatatttgaacaactaattgaaaaaacttttgtgacaactttcattttctctcttt 12668808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 20284884 - 20284828
Alignment:
Q  333 tgatatttgaacatctatttgaa-acaacttttgtgacaacctcttttttctctctt 388  Q
    ||||||||||||| | ||||||  |||||||||||||||||||  ||||||||||||    
T  20284884 tgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctctctt 20284828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 21071513 - 21071457
Alignment:
Q  333 tgatatttgaacatctatttgaa-acaacttttgtgacaacctcttttttctctctt 388  Q
    ||||||||||||| | ||||||  |||||||||||||||||||  ||||||||||||    
T  21071513 tgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctctctt 21071457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 27836332 - 27836292
Alignment:
Q  357 caacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||| |||||| |||||||||||||||||    
T  27836332 caacttatgtgacaacttcttttctctctcttttcattggt 27836292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 47849853 - 47849782
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  47849853 agagtagtgatatttgaacatctatttgaaacaactcttgtgacagcctcttttttctctcttttcattggt 47849782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 29706085 - 29706015
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 29706015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 52727333 - 52727407
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  52727333 aaaagagtagtgatatttaaacatctatttgaaacaatttttgtgacaatctcttttttctctattttcattggt 52727407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 11173637 - 11173562
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| | ||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11173637 taaaagagtaataatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 11173562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 20380776 - 20380848
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  20380776 aagagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctcacttttcattggt 20380848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 34733183 - 34733247
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttc 391  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  34733183 gagtagtgatatttgaacatctatttgaaacaacttttgagacaatctcttttttctcttttttc 34733247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 46473312 - 46473240
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  46473312 aagagtaatgatatttgaacaaccatttgatacaacttttatgacaacttcttttttctctcttttcattggt 46473240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 32687846 - 32687919
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| |||||||| ||||||||| |||| ||| ||||||||||||||||||||||||    
T  32687846 aagagtaatgatatttgaacaactatttgatacaacttttggtgataacttcttttttctctcttttcattggt 32687919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 19418055 - 19418119
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||| |||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  19418055 tgatatttgaacatccatttgagacaactcttgtgacaacttcttttctctctcttttcattggt 19418119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 7231894 - 7231965
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||||| ||||||||||||||||  | ||||||||||||||||||||||    
T  7231894 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaatttattttttctctcttttcattggt 7231965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 34271373 - 34271447
Alignment:
Q  325 aagagtattgatatttgaacat--ctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  34271373 aagagtagtgatatttgaagatatctatttgaaacaacttttgatacaatctcttttttctctcttttcattggt 34271447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 41111960 - 41112031
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||||| |||||| ||||||||| | ||||| |||||| |||||||||||||||||    
T  41111960 agagtagtgatatttgaacatccatttgagacaacttttttaacaacttcttttctctctcttttcattggt 41112031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 49131030 - 49130969
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||||||||| |||||| |||| |||||||||||| |||||| ||||||||||||||    
T  49131030 tgatatttgaacatccatttgagacaatttttgtgacaacttcttttctctctcttttcatt 49130969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 37303567 - 37303497
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||||| || |||||||||| |||| ||| ||||||||||||||||  | ||||||||||||||||||||    
T  37303567 aagagtagtgttatttgaacaactatatgagacaacttttgtgacaatttattttttctctcttttcattg 37303497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 46315844 - 46315914
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||||| ||| || |||||| |||||||||| | |||| ||| |||||||||||||    
T  46315844 gagtattgatatttgaacatccattcgagacaactcttgtgacaactttttttatctttcttttcattggt 46315914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 53715492 - 53715430
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcatt 394  Q
    ||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||| |||||    
T  53715492 tgatatttgaacaactatttgataacaacttttatgacaacctcctttttctctcttctcatt 53715430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 5188389 - 5188348
Alignment:
Q  356 acaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  5188389 acaacttttgtgacaacttcttttttctctcttttcattggt 5188348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 6126643 - 6126566
Alignment:
Q  321 ataaaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||| |||||| ||||||||||||| | |||| | |||||||||| | ||||| ||||||||||||||||||||||||    
T  6126643 ataatagagtagtgatatttgaacaaccatttcatacaacttttggttacaacttcttttttctctcttttcattggt 6126566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 32457642 - 32457714
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgt--gacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| |||| |||| |  |||||| ||||||||||||||||||||||||    
T  32457642 gagtagtgatatttgaacaactatttgatacaatttttttttgacaacttcttttttctctcttttcattggt 32457714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 37215129 - 37215190
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| | || ||| ||||||||||||||||| | ||||||||||||||||||||||    
T  37215129 tatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttcattggt 37215190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 44127086 - 44127151
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||||  |||||||||| |||||||||| |||||||||||| ||||||||    
T  44127086 tgatatttgaacaactatttgctaacaacttttatgacaacctcatttttctctcttctcattggt 44127151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 55344179 - 55344255
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaac-ttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| ||||||||||||| |||||| | ||||| |||| ||||||| | | ||||||||||||||||||||    
T  55344179 taaaagagtagtgatatttgaacaactatttcatacaacattttatgacaacttttcttttctctcttttcattggt 55344255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 31997988 - 31997921
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctctttt 390  Q
    |||||||| ||||||||||||| | |||||| |||||||||| ||||||| |||||| ||||||||||    
T  31997988 aaagagtagtgatatttgaacaaccatttgagacaacttttgatgacaacttcttttctctctctttt 31997921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 27198071 - 27198113
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  27198071 aacaacttttatgacaacctcatttttctctcttttcattggt 27198113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 28300535 - 28300605
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | || ||| |||||| |||||||||| | | ||||||||||||||||||||    
T  28300535 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaacttttattttctctcttttcattggt 28300605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 37302963 - 37303033
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || ||||||||||   || ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  37302963 gagtagtgttatttgaacaagcatatgagacaacttttgtgacaatttcttttttctctcttttcattggt 37303033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 41957695 - 41957625
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||| |||| | |||| ||||||||||||||| ||  ||||||||||| ||||||||||||    
T  41957695 gagtagtgatatttaaacaaccattttaaacaacttttgtgataatttcttttttctcacttttcattggt 41957625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 28269979 - 28269918
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| | || ||| |||||||||| |||||| |||||||||| |||||||||||||    
T  28269979 tatttgaacaaccatatgagacaacttttgcgacaacttcttttttctatcttttcattggt 28269918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 33007543 - 33007472
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctc-ttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||| |||| |||||||||||| || ||||||||||||||||||||||    
T  33007543 gagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttctttttttctctcttttcattggt 33007472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 35272210 - 35272139
Alignment:
Q  327 gagtattgatatttgaacatct-atttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||||||||  | |||| | ||||||| ||||||||| ||||||||||||||||| ||||||    
T  35272210 gagtagtgatatttgaacaattcattttagacaacttatgtgacaacttcttttttctctctttttattggt 35272139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 42475861 - 42475936
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||| || |||||||||| | || | | ||||||||||||| ||| | ||||||||||||||||||||||    
T  42475861 taaatgagtagtgttatttgaacaaccatataagacaacttttgtgaaaacttattttttctctcttttcattggt 42475936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 44365175 - 44365250
Alignment:
Q  322 taaaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattgg 396  Q
    |||||||||  ||||||||||||| | |||| | |||| ||||| ||||||| |||||| ||||||||||||||||    
T  44365175 taaaagagtggtgatatttgaacaaccattttatacaatttttggtgacaacttcttttctctctcttttcattgg 44365250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 23553507 - 23553548
Alignment:
Q  354 aaacaacttttgtgacaacctcttttttctctcttttcattgg 396  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  23553507 aaacaactttagtgacaacct-ttttttctctcttttcattgg 23553548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 23553694 - 23553735
Alignment:
Q  354 aaacaacttttgtgacaacctcttttttctctcttttcattgg 396  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  23553694 aaacaactttagtgacaacct-ttttttctctcttttcattgg 23553735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 46953132 - 46953086
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaac 372  Q
    |||||| ||||||||||||| |||||||| ||||||||| |||||||    
T  46953132 agagtagtgatatttgaacaactatttgatacaacttttatgacaac 46953086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 108615 - 108544
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattgg 396  Q
    |||||||| ||||||||||||| |||||| | ||||||||| ||||||| || |||||||||| ||||||||||    
T  108615 aaagagtagtgatatttgaacaactatttcatacaacttttggtgacaa-cttttttttctct-ttttcattgg 108544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 24551112 - 24551185
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattgg 396  Q
    ||||||||| || ||||||||||   |  ||| |||| || ||||||||| |||||||||||||||||||||||    
T  24551112 aaaagagtagtgttatttgaacaatcaaatgagacaatttatgtgacaacttcttttttctctcttttcattgg 24551185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 30839643 - 30839570
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattgg 396  Q
    |||| |||| |||||||| ||||   || ||| |||||| |||||||||| ||| |||||||||||||||||||    
T  30839643 aaaaaagtagtgatatttaaacaatcatatgatacaactcttgtgacaacttctattttctctcttttcattgg 30839570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 31249216 - 31249281
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | |||||||||| ||||||| | |||||| |||||||||||||||    
T  31249216 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttttttctcttttcattggt 31249281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 36869731 - 36869796
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||  |||||||||| ||| |||||||||||||||||    
T  36869731 tgatatttgaacaaccatttgctaacaactttcatgacaacctcatttctctctcttttcattggt 36869796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 39604144 - 39604205
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| |||  ||| | ||||| | ||||||| ||||||||||||||||||||||||    
T  39604144 tatttgaacaactaaatgagataacttatttgacaacttcttttttctctcttttcattggt 39604205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 43169642 - 43169712
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||| | |||||||||| ||||||| |  |||||||||||||||||||||    
T  43169642 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt--tttttctctcttttcattggt 43169712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 51650542 - 51650466
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttct--ctcttttcattggt 397  Q
    |||||||  ||||||||||||| | |||| | |||||||||| ||||||| ||||||||||  ||||||||||||||    
T  51650542 aaagagtggtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttctctctcttttcattggt 51650466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 51973442 - 51973393
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaac 372  Q
    ||||||| | ||||||||||||||| |||||  |||||||||||||||||    
T  51973442 aaaagagaaatgatatttgaacatccatttggtacaacttttgtgacaac 51973393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 3483301 - 3483233
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||| || ||||||||||   |||||| ||||| | ||||||||| | ||||||||||||||||||||    
T  3483301 gagtagtgttatttgaacaatcatttgatacaacatctgtgacaactttttttttctctcttttcattg 3483233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 24537394 - 24537331
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | |||| ||| |||||||| |||||||||| |||||||||||||    
T  24537394 tgatatttgaacaaccattttatacaa-tttagtgacaacttcttttttctttcttttcattggt 24537331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 29795618 - 29795548
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29795618 gagtagtgatatttgaacatcaatttgaaacaacttttgtgacaaccacttttttctctcttttcattggt 29795548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 39454135 - 39454206
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  39454135 agagtagtgatatttgaacatctatttgaaacaagttttgagacaatctcttttttctctcttttcattggt 39454206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 36435857 - 36435795
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  36435857 tgatatttgaacatttatttgaaacaacttttgtgacaacctcttttctctctcttttcattg 36435795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 3091926 - 3091853
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| |||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  3091926 aaagagtagtgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 3091853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 36133159 - 36133086
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  36133159 aaagagtagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctcttttcattggt 36133086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 6365362 - 6365298
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||    
T  6365362 tgatatttgaacatctatttaaaacaacttttatgacaacctcttttttctctctttttattggt 6365298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 11164271 - 11164335
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11164271 tgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 11164335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 34442295 - 34442225
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||||    
T  34442295 gagtagtgatatttgaacatctatttgaaacaatttttctgacaacctcttttctctctctttttattggt 34442225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 13711246 - 13711173
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| ||||||   ||||||||||||||||| ||||||||||||||||||||||||    
T  13711246 aaagagtagtgatatttgaacaactattttgtacaacttttgtgacaacttcttttttctctcttttcattggt 13711173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 12600224 - 12600160
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  12600224 tgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctcttttcattggt 12600160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 22390337 - 22390264
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||  |||||||||||||| |||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  22390337 aaagagtagagatatttgaacatccatttgagacaactcttgtgacaacttcttttctctctcttttcattggt 22390264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 14714168 - 14714100
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||| ||||||||||||||| |||||| |||| |||||||||||| |||||| |||||||||||||||    
T  14714168 gagtagtgatatttgaacatccatttgagacaatttttgtgacaacttcttttctctctcttttcattg 14714100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 25801706 - 25801770
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| |||||||||||||  || ||||||||||||||||||||||||    
T  25801706 tgatatttgaacaacaatttgagacaacttttgtgatcacttcttttttctctcttttcattggt 25801770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 42251807 - 42251879
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||| ||||   ||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  42251807 aagagtagtgatatttaaacaatcatttggaacaacttatgtgacaacttcttttttctctcttttcattggt 42251879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 2013173 - 2013244
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| |||||||| |||||| |||||| |||||| |||||||||| | |||| |||||||||||||||||    
T  2013173 agagtagtgatattttaacatccatttgagacaactcttgtgacaacttattttctctctcttttcattggt 2013244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 44190011 - 44189939
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||||| ||| || |||||| |||||||||| ||  ||||||||||||||||||||    
T  44190011 aaaagagtagtgatatttgaacatccattcgagacaactcttgtgacaacatc--ttttctctcttttcattggt 44189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 14140228 - 14140298
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||||||||   |||| ||| ||||||||||||||  ||||||||||||||||||||||||    
T  14140228 gagtagtgatatttgaacaatcatttaaaataacttttgtgacaatttcttttttctctcttttcattggt 14140298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 23344878 - 23344948
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||  |||||| |||||| || ||||||| |||||| |||||||||||||||||    
T  23344878 gagtagtgatatttgaacattcatttgagacaactcttctgacaacttcttttctctctcttttcattggt 23344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 32750183 - 32750110
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| || |||||||||| | || ||| |||| |||||||||||| | ||||||||||||||||||||||    
T  32750183 aaagagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcattggt 32750110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 36376737 - 36376810
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| | ||||||||||||||||| |||| | || |||| | ||||| ||||||||||||||||||||||||    
T  36376737 aaagaggagtgatatttgaacatctaattgagataatttttttaacaacttcttttttctctcttttcattggt 36376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 37631261 - 37631326
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||| ||||||||||||||||||||||| ||||||||    
T  37631261 tgatatttgaacaaccatttgctaacaacttttatgacaacctcttttttctctcttctcattggt 37631326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 8555177 - 8555249
Alignment:
Q  324 aaagagtattgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||| | |||||||||||||  ||||||  |||||||||| |||||||||| |||||||||||||||||||    
T  8555177 aaagagcaatgatatttgaacaattatttgccaacaacttttatgacaacctcctttttctctcttttcattg 8555249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 13104663 - 13104591
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| || |||||||||| | || ||| |||| |||||||||||| | ||||||||||||||||||||||    
T  13104663 aagagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcattggt 13104591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 43650430 - 43650506
Alignment:
Q  321 ataaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||| |||||||| ||||   |||||| ||||||| ||||||||  ||||||||||||||||| ||||||    
T  43650430 ataaaagagtaatgatatttaaacaatcatttgatacaacttatgtgacaatttcttttttctctctttttattggt 43650506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 39286020 - 39285965
Alignment:
Q  342 aacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||| |||||||| ||||||||||||||||| |||||||||||| |||| ||||||    
T  39286020 aacaactatttgatacaacttttgtgacaacttcttttttctctttttttattggt 39285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 42081220 - 42081149
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||||  |||||| |||| |||| | ||||| |||||||||||| |||||||||||    
T  42081220 agagtagtgatatttgaacattaatttgagacaatttttttaacaacttcttttttctctattttcattggt 42081149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 11229210 - 11229280
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  11229210 gagtagtgatatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 11229280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 23045347 - 23045273
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| || |||||||||| | |  ||| ||||||| ||||||||| |||||||||||| |||||||||||    
T  23045347 aaaagagtagtgttatttgaacaaccaaatgagacaacttatgtgacaacttcttttttctctattttcattggt 23045273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 31296728 - 31296802
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||| | | || ||  ||||||| ||||||||  ||||||||||||||||||||||||    
T  31296728 aaaagagtagtgatatttgaataaccatatgggacaacttatgtgacaatttcttttttctctcttttcattggt 31296802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 2464322 - 2464274
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaac 372  Q
    |||||| | ||||||||||||||| |||||| |||||||||||||||||    
T  2464322 aaagagaaatgatatttgaacatccatttgatacaacttttgtgacaac 2464274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 19913968 - 19913896
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||| | |||||||| | ||||||| | ||||||||||||||||||||||    
T  19913968 agagtagtgatatttgaacaaccatttcatacaactttcggtgacaactttttttttctctcttttcattggt 19913896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 43725381 - 43725317
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  43725381 tgatatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 43725317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 45515487 - 45515558
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||| ||||||||||||||| | |||| | |||||||||| ||||||| |||||| |||||||||||||||||    
T  45515487 agaggattgatatttgaacaaccatttcatacaacttttggtgacaacttctttt-tctctcttttcattggt 45515558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 7086012 - 7086083
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| || |||||||||| | || ||| |||| |||||||||||| | |||| |||||||||||||||||    
T  7086012 agagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttctctctcttttcattggt 7086083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 12962569 - 12962498
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| |||||||| | || |||||| ||||  |||||| |||||||||| ||||||    
T  12962569 agagtagtgatatttgaacaactatttgatataaattttgtaacaatttcttttctctctcttttaattggt 12962498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 12066063 - 12066021
Alignment:
Q  356 acaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  12066063 acaacttttggtgacaacttcttttttctctcttttcattggt 12066021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 23880277 - 23880207
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||| ||||||||| ||||||  | ||||||||||||||||||||||    
T  23880277 gagtaatgttatttgaacaaccatatgagacaacttttatgacaatttattttttctctcttttcattggt 23880207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 1574630 - 1574565
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||  |||||||||| |||| ||||||||||||||||    
T  1574630 tgatatttgaacaaccatttgctaacaactttaatgacaacctcattttactctcttttcattggt 1574565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 1889292 - 1889259
Alignment:
Q  364 tgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||||||||||||||    
T  1889292 tgtgacaacttcttttttctctcttttcattggt 1889259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 18917806 - 18917737
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattgg 396  Q
    ||||| || |||||||||| | |  ||| |||| || ||||||||| |||||||||||||||||||||||    
T  18917806 gagtagtgttatttgaacaacaaaatgagacaatttatgtgacaacttcttttttctctcttttcattgg 18917737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 34249765 - 34249692
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctttttt-ctctcttttcattggt 397  Q
    ||||||| || |||||||||| | || ||| |||| |||||||||||| | |||||| ||||||||||||||||    
T  34249765 aagagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttatttttttctctcttttcattggt 34249692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 36763414 - 36763479
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  ||||| |||| |||||||||  |||||||||||||||||||||    
T  36763414 tgatatttgaacaaccatttgttaacaatttttatgacaaccttctttttctctcttttcattggt 36763479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 44059609 - 44059682
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaa-acaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| | ||||||||||| | ||||||  | |||||||||||||||||  |||||||||||||| ||||||    
T  44059609 aagagtaattatatttgaacaaccatttgatgataacttttgtgacaacctactttttctctcttttaattggt 44059682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 7121548 - 7121476
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    ||||||||  |||||||| || | | |||| ||| ||||||||||||||| ||||||||||  ||||||||||    
T  7121548 aaaagagtggtgatatttaaataaccattttaaataacttttgtgacaacttcttttttcttacttttcattg 7121476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 33295975 - 33296046
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||| | ||||||   |||||||||| ||||||| | ||||||||||||||||||||||    
T  33295975 agagtagtgatatttgaagaactatttcgtacaacttttggtgacaactt-ttttttctctcttttcattggt 33296046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 113808 - 113737
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  113808 agagtagtgatatttaaacatctatttgaaacaatttttgtgacaacctctcttttctctcttttcattggt 113737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 40610411 - 40610341
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  40610411 gagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcattggt 40610341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 49453662 - 49453592
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  49453662 aaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa---cttttttctctcttttcattggt 49453592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 22389411 - 22389484
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| | ||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  22389411 aaaagagtaatgatatttgaacaaccatttgat-caacttttgtgacaacttcttttttctctcttttcattggt 22389484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 36418251 - 36418191
Alignment:
Q  337 atttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  36418251 atttgaacaactatttgatacaacttttgtgacaacttcttttctctctcttttcattggt 36418191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 46948162 - 46948091
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||||| |||||| |||||| |||||||||| |||||| ||| |||||||||||||    
T  46948162 agagtagtgatatttgaacatccatttgagacaactcttgtgacaacttcttttctctatcttttcattggt 46948091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 2362551 - 2362481
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||||| |||| |||||||||||| |||||| ||||| |||||||||||    
T  2362551 gagtagtgatatttgaacaactatttgatacaatttttgtgacaacttcttttctctcttttttcattggt 2362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 50659079 - 50659151
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| || |||||||||| | || ||||||||||| ||||||||| |||||| |||||||||||||||||    
T  50659079 aagagtagtgttatttgaacaaccatatgaaacaacttatgtgacaacttcttttctctctcttttcattggt 50659151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 39010997 - 39010926
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| || |||||||||| | || ||| ||||||||||||||||| | ||||||||||||||||||||||    
T  39010997 agagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttcattggt 39010926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 14002627 - 14002701
Alignment:
Q  324 aaagagtattgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| ||||||||||||| |||||||  |||||||||| ||||||  || |||||||||||||||||||||    
T  14002627 aaagagtagtgatatttgaacaactatttgctaacaacttttatgacaatttcatttttctctcttttcattggt 14002701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 5477073 - 5477122
Alignment:
Q  348 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  5477073 tatttgatacaacttttgtgacaacttcttttttctctctttttattggt 5477122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 32966444 - 32966379
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| ||||||   ||||||||||||||||||||| |||||||||||||| ||||||    
T  32966444 tgatatttgaacaactatttactaacaacttttgtgacaacctcatttttctctctttttattggt 32966379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 37690576 - 37690527
Alignment:
Q  348 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  37690576 tatttgatacaacttttgtgacaacttcttttctctctcttttcattggt 37690527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 31290103 - 31290167
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | ||||||||||||||||| | |||||||||| |||||||||||    
T  31290103 tgatatttgaacaaccatttcacacaacttttgtgacaacttattttttctcttttttcattggt 31290167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 30631733 - 30631804
Alignment:
Q  326 agagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||| ||||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  30631733 agagtagtgatatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 30631804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 31480023 - 31480094
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||| |||||| | |||| ||||| ||||||| | ||||||||||||||||||||||    
T  31480023 gagtagtgatatttgaacaactatttcatacaatttttggtgacaactttttttttctctcttttcattggt 31480094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 15466932 - 15466866
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctttt 390  Q
    |||||||  ||||||||||| |||||||| ||| || ||||||||||| ||||||||||| ||||||    
T  15466932 aaagagtggtgatatttgaatatctatttaaaataatttttgtgacaatctcttttttctttctttt 15466866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 21255679 - 21255744
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||| |||||||||| |||||||||||| ||||||||    
T  21255679 tgatatttgaacaaccatttgctaacaacttttatgacaacctcctttttctctcttctcattggt 21255744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 28253188 - 28253127
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| | || ||| ||||||||||| ||||| |||||| |||||||||||||||||    
T  28253188 tatttgaacaaccatatgagacaacttttgtaacaacttcttttctctctcttttcattggt 28253127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 43640881 - 43640946
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||  |||||||||| |||||||||||||||||||||    
T  43640881 tgatatttgaacaaccatttgctaacaactttcatgacaacctcatttttctctcttttcattggt 43640946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 43755572 - 43755629
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctttttt 381  Q
    |||||||| ||||||||||||||| |||||| |||||| |||||||||| | ||||||    
T  43755572 aaagagtaatgatatttgaacatccatttgagacaactcttgtgacaacttttttttt 43755629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 50141833 - 50141894
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| |||| ||| ||||||||||||||||  | |||| |||||||||||||||||    
T  50141833 tatttgaacaactatatgagacaacttttgtgacaatttattttctctctcttttcattggt 50141894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 51571602 - 51571540
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | ||||||||||||||||| ||||||||  ||||||||||||||    
T  51571602 tgatatttgaacaaccatttaatacaacttttgtgacaacttctttttt--ctcttttcattggt 51571540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 31427844 - 31427916
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||||||||  ||||| ||||||||||| ||||||  |||||||| ||  |||||||||||    
T  31427844 aagagtagtgatatttgaacaattattttaaacaacttttatgacaatttcttttttttcatttttcattggt 31427916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 34187440 - 34187376
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | || ||| |||| || ||||||||| ||| ||||||||||||||||||||    
T  34187440 tgatatttgaacaaccatgtgagacaatttatgtgacaacttctcttttctctcttttcattggt 34187376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 37843320 - 37843391
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| |||||||| | || || ||||||||    ||||||||||||||||||||||    
T  37843320 aaaagagtagtgatatttgaacaactatttgatataatttgtgtgacaa---tttttttctctcttttcattggt 37843391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 45740431 - 45740503
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| |||||||||||||   |||||||| || |||| ||||||| |||||||||||  |||||||||||    
T  45740431 aagagtagtgatatttgaacaatcatttgaaataatttttatgacaacttcttttttctcaattttcattggt 45740503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 48872834 - 48872909
Alignment:
Q  321 ataaaagagtattgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttctctcttttcattgg 396  Q
    ||||||||||| ||||||||||||| | |||| | ||||||||| ||||||| || |||| ||||||||||||||||    
T  48872834 ataaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaa-cttttttctctctcttttcattgg 48872909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 7645443 - 7645511
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| ||||||||||||||| |||||| |||| |||| | ||||| ||  ||||||||||||||||||||    
T  7645443 gagtagtgatatttgaacatccatttgagacaatttttttaacaacttc--ttttctctcttttcattggt 7645511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 16836031 - 16836073
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||||||||||| ||||||||||  ||||||||||||    
T  16836031 aacaacttttgtgacaacttcttttttcttacttttcattggt 16836073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 33676083 - 33676029
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctctttttt 381  Q
    ||||||||||||||||||| |||||| | | ||||||||||||||| | ||||||    
T  33676083 gagtattgatatttgaacaactatttaataaaacttttgtgacaacttttttttt 33676029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 35846216 - 35846278
Alignment:
Q  335 atatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||| | |||| | ||||||||||  ||||| ||||||||||| ||||||||||||    
T  35846216 atatttgaacaaccattttagacaacttttggtacaacttcttttttctcacttttcattggt 35846278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 36690461 - 36690531
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||| ||||||||||||||||| | |||| ||||| |||||||||||    
T  36690461 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctattttcattggt 36690531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 36706562 - 36706632
Alignment:
Q  327 gagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| || |||||||||| | || ||| ||||||||||||||||| | |||| ||||| |||||||||||    
T  36706562 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctattttcattggt 36706632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 50061871 - 50061933
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||||||||||| |||||||||||| | || | ||||| |||||| |||||||||| ||||    
T  50061871 tgatatttgaacatttatttgaaacaattcttataacaacttcttttctctctctttttattg 50061933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 366842 - 366769
Alignment:
Q  324 aaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||| || |||||||||| | |  ||| ||||||| ||||||||| | ||||| ||||||||||||||||    
T  366842 aaagagtaatgttatttgaacaaccaaatgagacaacttatgtgacaacttttttttcctctcttttcattggt 366769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 7503642 - 7503577
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||| | |||||||||| ||||||  | ||||||||||||||||||||||    
T  7503642 tgatatttgaacaaccatttcatacaacttttggtgacaattttttttttctctcttttcattggt 7503577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 16987624 - 16987559
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  ||||| || | |||||||||| |||||||||||||||||||||    
T  16987624 tgatatttgaacaaccatttgctaacaatttctatgacaacctcctttttctctcttttcattggt 16987559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 25302539 - 25302604
Alignment:
Q  333 tgatatttgaacatct-atttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| || |||| | |||| || ||||||||| | ||||||||||||||||||||||    
T  25302539 tgatatttgaacaactcattttagacaatttatgtgacaactttttttttctctcttttcattggt 25302604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 29294122 - 29294060
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||| || |||||||| ||||||||  | | ||||||||||||||||||||    
T  29294122 tgatatttgaacaactatgtggaacaacttatgtgacaa--tttcttttctctcttttcattggt 29294060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 29300496 - 29300553
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctttt 390  Q
    ||||||||||||| |||| || |||||||| ||||||||  |||||| ||||||||||    
T  29300496 tgatatttgaacaactatgtggaacaacttatgtgacaatttcttttctctctctttt 29300553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 40605315 - 40605380
Alignment:
Q  333 tgatatttgaacatctatttga-aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  |||||||||| |||||||||  |||||||||||| ||||||||    
T  40605315 tgatatttgaacaaccatttgctaacaacttttatgacaaccttctttttctctcttctcattggt 40605380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 50436305 - 50436257
Alignment:
Q  348 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||||||| ||||| |||||| |||||||||||    
T  50436305 tatttgatacaacttttgtgacaacttctttattctct-ttttcattggt 50436257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 4604705 - 4604641
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  ||||| | | |||||||||  |||||||||||||||||||||    
T  4604705 tgatatttgaacaacgatttggtacaacctgtttgacaaccttctttttctctcttttcattggt 4604641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 11460970 - 11460906
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| ||||||||| |||||||||  ||| ||| |||||| ||||||    
T  11460970 tgatatttgaacaacaatttgatacaacttttttgacaaccttctttctctttctttttattggt 11460906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 15062030 - 15061958
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttg-tgacaacctcttttttctctcttttcattgg 396  Q
    ||||||| ||||||||||||| | |||| | | |||||||| ||||||| | ||||||||||||||| |||||    
T  15062030 aagagtagtgatatttgaacaaccatttcatataacttttggtgacaactttttttttctctctttttattgg 15061958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 25061909 - 25061845
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| ||||  | | |||||||||  |||||||||||||||||||||    
T  25061909 tgatatttgaacaaccatttgatacaatctatttgacaaccttctttttctctcttttcattggt 25061845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 29264179 - 29264115
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||| || |||||||| ||||| ||  |||||| |||||||||| ||||||    
T  29264179 tgatatttgaacaactatgtggaacaacttatgtgataatttcttttctctctctttttattggt 29264115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 31817290 - 31817354
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||| |||||| |||| |||| | ||||  |||||||||| | |||||||||||    
T  31817290 tgatatttgaacatccatttgagacaatttttttaacaatttcttttttctttattttcattggt 31817354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 40595949 - 40596013
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| ||||| ||| ||||||    ||||||||||||||||||||||    
T  40595949 tgatatttgaacaaccatttgatacaacctttttgacaataatttttttctctcttttcattggt 40596013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 44730820 - 44730756
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||  ||||| ||| |||||||||  ||||||||| |||||||||||    
T  44730820 tgatatttgaacaaccatttggtacaacctttttgacaaccttctttttctcttttttcattggt 44730756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 48872555 - 48872491
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| | |||||| ||||| | | |||||||||   ||||||||||||||||||||    
T  48872555 tgatatttgaacaaccatttgatacaacctatttgacaaccttccttttctctcttttcattggt 48872491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 51339595 - 51339659
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||| |||||||  ||||| | | |||||||||   ||||||||||||||||||||    
T  51339595 tgatatttgaacaactatttggtacaacctatttgacaaccttcattttctctcttttcattggt 51339659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 11353 - 11304
Alignment:
Q  348 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11353 tatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 11304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 18187 - 18116
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| |||||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  18187 aagagtagtgatatttgaacaactatttgatacaacttttatgacaa-cttttttttctctcttttcattggt 18116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 15076 - 15147
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| |||||||  ||||||||||||||||| || ||||||||| |||||||||||    
T  15076 aagagtagtgatatttgaacaactatttggtacaacttttgtgacaacttc-tttttctcttttttcattggt 15147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 6602 - 6541
Alignment:
Q  334 gatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattg 395  Q
    |||||||||||||| |||||| |||||| | |||| ||| ||||||||||||||||||||||    
T  6602 gatatttgaacatccatttgagacaactctcgtgataacttcttttttctctcttttcattg 6541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 11421 - 11495
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| ||||||||||||| |||||| | ||||||||||  ||||  | ||||||||| ||||||||||||    
T  11421 aaaagagtagtgatatttgaacaactattttagacaacttttgatacaatttattttttctcacttttcattggt 11495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 10414 - 10475
Alignment:
Q  336 tatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||| | || ||| ||||||||||||||||| | |||| |||||||||||||||||    
T  10414 tatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcattggt 10475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 36186 - 36111
Alignment:
Q  325 aagagtattgatatttgaacatctatttgaaacaac-ttttgtgacaac--ctcttttttctctcttttcattggt 397  Q
    ||||||| ||||||||||||| | |||||| ||||| ||||||||||||   | ||||||||||||||||||||||    
T  36186 aagagtagtgatatttgaacaaccatttgatacaactttttgtgacaacttgttttttttctctcttttcattggt 36111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 31517 - 31559
Alignment:
Q  355 aacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||| |||||||||||| | ||||||||||||||||||||||    
T  31517 aacaatttttgtgacaactttttttttctctcttttcattggt 31559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 120019 - 119945
Alignment:
Q  323 aaaagagtattgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||| |||||||| |||| | |||||| || |||  |||| |||  ||||||||||||||||||||||||    
T  120019 aaaagagtagtgatatttaaacaaccatttgatactactactgtggcaatttcttttttctctcttttcattggt 119945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 9767 - 9807
Alignment:
Q  357 caacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  9767 caacttttgtgacaacttattttttttctcttttcattggt 9807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 190780 - 190844
Alignment:
Q  333 tgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggt 397  Q
    ||||||||||| || |||||||||||| |||||||| ||  |||||||||||  |||| ||||||    
T  190780 tgatatttgaatatttatttgaaacaatttttgtgataatttcttttttctcattttttattggt 190844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University