View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_high_23 (Length: 253)

Name: NF3719_high_23
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_high_23
NF3719_high_23
[»] chr7 (4 HSPs)
chr7 (1-244)||(44059139-44059382)
chr7 (139-240)||(15996592-15996693)
chr7 (139-240)||(14579522-14579623)
chr7 (70-122)||(29685232-29685284)
[»] chr2 (2 HSPs)
chr2 (70-246)||(8309159-8309350)
chr2 (183-236)||(2295856-2295909)
[»] scaffold0209 (1 HSPs)
scaffold0209 (70-121)||(27303-27354)
[»] chr8 (1 HSPs)
chr8 (70-121)||(614519-614570)
[»] chr1 (2 HSPs)
chr1 (157-202)||(2357589-2357634)
chr1 (157-202)||(2362184-2362229)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44059382 - 44059139
Alignment:
Q  1 taatttagtgtatttcaattggtttaattgttagtttgatcttttagatagattaatgttcgcatgtagtattacatagtgatattgctgatagcaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44059382 taatttagtgtatttcaattggtttaattgttagtttgatcttttagatagattaatgttcgcatgtagtattacatagtgatattgctgatagcaacat 44059283  T
Q  101 cacttagtcagctgttacttgcgcttagggtttatttcctctattgtttgtccatgatagcttatcctacttctagttattagtatatataccagttgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44059282 cacttagtcagctgttacttgcgcttagggtttatttcctctattgtttgtccatgatagcttatcctacttttagttattagtatatataccagttgta 44059183  T
Q  201 agactcattttgatcaataacaattcattctattcattttcctt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44059182 agactcattttgatcaataacaattcattctattcattttcctt 44059139  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 15996592 - 15996693
Alignment:
Q  139 ctctattgtttgtccatgatagcttatcctacttctagttattagtatatataccagttgtaaga-ctcattttgatcaataacaattcattctattcat 237  Q
    |||||| ||||||||||  ||||||||| ||| ||||| |  | |||||||||| |||||||||  ||||||| ||| ||||||||||||||||||||||    
T  15996592 ctctatagtttgtccatagtagcttatcatacatctagattcttgtatatatactagttgtaagctctcattt-gattaataacaattcattctattcat 15996690  T
Q  238 ttt 240  Q
    |||    
T  15996691 ttt 15996693  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 14579522 - 14579623
Alignment:
Q  139 ctctattgtttgtccatgatagcttatcctacttctagttattagtatatataccagttgtaaga-ctcattttgatcaataacaattcattctattcat 237  Q
    |||||| ||||||||||  |||||| || ||| ||||| |  | |||||||||| |||||||||  ||||||| ||| ||||| ||||||||||||||||    
T  14579522 ctctatagtttgtccatagtagcttgtcatacatctagattcttgtatatatactagttgtaagctctcattt-gattaataaaaattcattctattcat 14579620  T
Q  238 ttt 240  Q
    |||    
T  14579621 ttt 14579623  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 29685232 - 29685284
Alignment:
Q  70 tattacatagtgatattgctgatagcaacatcacttagtcagctgttacttgc 122  Q
    |||||||||||| ||||| |||| |||| ||||||||||| |||||| |||||    
T  29685232 tattacatagtggtattgttgatggcaaaatcacttagtccgctgttgcttgc 29685284  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 8309159 - 8309350
Alignment:
Q  70 tattacatagtgatattgctgatagcaacatcacttagtcagctgttacttgc---------------gcttagggtttatttcctctattgtttgtcca 154  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |               | ||||||||| |||||||||||||||||| |    
T  8309159 tattacatagtgatattgctgatagcaaaatcacttagtcagctgttacttaccgtgcaagtaactgtgattagggtttctttcctctattgtttgtcta 8309258  T
Q  155 tgatagcttatcctacttctagttattagtatatataccagttgtaag-actcattttgatcaataacaattcattctattcattttcctttg 246  Q
    |||||||||||| ||| ||||| || |||||||||||| |||||||||  |||||||  || |||||||||||||||||||||||||||||||    
T  8309259 tgatagcttatcatacatctagataatagtatatatacaagttgtaagctctcatttcaat-aataacaattcattctattcattttcctttg 8309350  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 2295856 - 2295909
Alignment:
Q  183 gtatatataccagttgtaaga-ctcattttgatcaataacaattcattctattca 236  Q
    ||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||    
T  2295856 gtatatataccggttgtaagctctcattt-gatcaataacaattcattctattca 2295909  T

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Target: scaffold0209 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 27303 - 27354
Alignment:
Q  70 tattacatagtgatattgctgatagcaacatcacttagtcagctgttacttg 121  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| |||||||||    
T  27303 tattacataatgatattgctgatagcaatatcacttagacagttgttacttg 27354  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 614519 - 614570
Alignment:
Q  70 tattacatagtgatattgctgatagcaacatcacttagtcagctgttacttg 121  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| |||||||||    
T  614519 tattacataatgatattgctgatagcaatatcacttagacagttgttacttg 614570  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 2357589 - 2357634
Alignment:
Q  157 atagcttatcctacttctagttattagtatatataccagttgtaag 202  Q
    |||||||| | |||||||||||||||||||||||||  ||||||||    
T  2357589 atagcttaccatacttctagttattagtatatatacttgttgtaag 2357634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 2362184 - 2362229
Alignment:
Q  157 atagcttatcctacttctagttattagtatatataccagttgtaag 202  Q
    |||||||| | |||||||||||||||||||||||||  ||||||||    
T  2362184 atagcttaccatacttctagttattagtatatatacttgttgtaag 2362229  T

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