View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_high_26 (Length: 249)
Name: NF3719_high_26
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 3990303 - 3990527
Alignment:
| Q |
8 |
agagatgaaagagacagcttttatcatgcagaatgtttcagagaggtaacaccaccttttgattttcttcactcttggtatgcatgcagctttaaacctt |
107 |
Q |
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| T |
3990303 |
agagatgaaagagacagcttttatcatgcagaatgtttcagagaggtaacaccaccttttgattttcttcactcttggtatgcatgcagctttaaacctt |
3990402 |
T |
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| Q |
108 |
tatttgatgcaggagtttgattgttatggatgaacttggtagggctacttcttcatctgatgggtttgcaatagcttggagttgctgcgagcatcttttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990403 |
tatttgatgcaggagtttgattgttatggatgaacttggtagggctacttcttcatctgatgggtttgcaatagcttggagttgctgcgagcatcttttg |
3990502 |
T |
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| Q |
208 |
tcactaaaagcgtaattgttgcttc |
232 |
Q |
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||||||||||||||||||||||||| |
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| T |
3990503 |
tcactaaaagcgtaattgttgcttc |
3990527 |
T |
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