View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_high_28 (Length: 228)

Name: NF3719_high_28
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_high_28
NF3719_high_28
[»] chr5 (11 HSPs)
chr5 (9-219)||(39168564-39168774)
chr5 (14-219)||(39399562-39399770)
chr5 (24-218)||(39726077-39726271)
chr5 (24-218)||(39879479-39879673)
chr5 (24-180)||(38987402-38987558)
chr5 (24-180)||(40417992-40418148)
chr5 (34-180)||(1849671-1849817)
chr5 (34-148)||(3299232-3299346)
chr5 (34-148)||(3392125-3392239)
chr5 (34-180)||(1163949-1164095)
chr5 (49-111)||(40596400-40596462)
[»] chr4 (1 HSPs)
chr4 (28-180)||(25912524-25912676)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 39168774 - 39168564
Alignment:
Q  9 ctccccctcctggaagacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagccttt 108  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39168774 ctcctcctcctggaggacaatatcaagaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagccttt 39168675  T
Q  109 aaggaaaaagcagtcaaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaacattag 208  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39168674 aaggaaaaagcagtcaaggtaaatggatcaagtaaagtaatttttttggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaatattag 39168575  T
Q  209 ggggcagaaaa 219  Q
    |||||||||||    
T  39168574 ggggcagaaaa 39168564  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 39399770 - 39399562
Alignment:
Q  14 cctcctggaagacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaagga 113  Q
    |||| |||| ||||||||  ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  39399770 cctcttggaggacaatattgagaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaagga 39399671  T
Q  114 aaaagcagtcaaggtaaatggatcaagtaa---agtaannnnnnnggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaacattaggg 210  Q
    |||||| |||||||||||||||||||| ||   |||||       |||||||||||||||||| ||||||||||||||||  | ||||||||||| |||     
T  39399670 aaaagcggtcaaggtaaatggatcaagcaaagtagtaatttttttggcaaccctagtgcatatgacaatatttgcaccgaacgaagcagcaacatcagga 39399571  T
Q  211 ggcagaaaa 219  Q
    |||||||||    
T  39399570 ggcagaaaa 39399562  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 39726271 - 39726077
Alignment:
Q  24 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 123  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  39726271 gacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 39726172  T
Q  124 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaacattagggggcagaaa 218  Q
    ||||||||||||||||| |||||||       |||||||||||||||||| |||||||||| ||| | || |||| |||| ||||| ||||||||    
T  39726171 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaatatttggacccaaagaagcaacaacgttaggaggcagaaa 39726077  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 39879673 - 39879479
Alignment:
Q  24 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 123  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  39879673 gacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 39879574  T
Q  124 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaatatttgcaccgagagtagcagcaacattagggggcagaaa 218  Q
    ||||||||||||||||| |||||||       |||||||||||||||||| |||||||||| ||| | || |||| |||| ||||| ||||||||    
T  39879573 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaatatttggacccaaagaagcaacaacgttaggaggcagaaa 39879479  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 38987558 - 38987402
Alignment:
Q  24 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 123  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  38987558 gacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 38987459  T
Q  124 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 180  Q
    ||||||||||||||||| |||||||       |||||||||||||||||| ||||||    
T  38987458 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 38987402  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 40418148 - 40417992
Alignment:
Q  24 gacaatatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtc 123  Q
    |||| |||| ||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| | |||| || |    |||    
T  40418148 gacagtatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtc 40418049  T
Q  124 aaggtaaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 180  Q
    ||||||||||||||||| |||||||       ||||||||||||||| || ||||||    
T  40418048 aaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaata 40417992  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 1849817 - 1849671
Alignment:
Q  34 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagc-agtcaaggtaaat 132  Q
    |||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||| ||||||  ||||||||||||| |||| |||  ||||||||||||    
T  1849817 agaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaa-gaaacagcgggtcaaggtaaat 1849719  T
Q  133 ggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 180  Q
    |||||||| |||||||       |||||||||||| || |||||||||    
T  1849718 ggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaata 1849671  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 3299346 - 3299232
Alignment:
Q  34 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaaggtaaatg 133  Q
    |||||||||||||  |||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||| || |    |||||||||||||    
T  3299346 agaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 3299247  T
Q  134 gatcaagtaaagtaa 148  Q
    ||||||| |||||||    
T  3299246 gatcaagcaaagtaa 3299232  T

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Target: chr5; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 3392239 - 3392125
Alignment:
Q  34 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaaggtaaatg 133  Q
    |||||||||||||  |||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||| || |    |||||||||||||    
T  3392239 agaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 3392140  T
Q  134 gatcaagtaaagtaa 148  Q
    ||||||| |||||||    
T  3392139 gatcaagcaaagtaa 3392125  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 1163949 - 1164095
Alignment:
Q  34 agaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaaggtaaatg 133  Q
    |||||| ||||||  |||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||| || |    |||||||||||||    
T  1163949 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 1164048  T
Q  134 gatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 180  Q
    ||||||| |||||||       |||||||||||| || |||||||||    
T  1164049 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 1164095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 40596462 - 40596400
Alignment:
Q  49 actaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaag 111  Q
    ||||||||| ||||||||| |||| |||||||  |||||||||||||||||||| | ||||||    
T  40596462 actaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaag 40596400  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 25912524 - 25912676
Alignment:
Q  28 atatcaagaacaacatatttgactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactgatcagcctttaaggaaaaagcagtcaagg 127  Q
    ||||||||||||| |||||  |||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| ||| || ||  ||||||||    
T  25912524 atatcaagaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaagg 25912623  T
Q  128 taaatggatcaagtaaagtaannnnnnnggcaaccctagtgcatataacaata 180  Q
    |||||||||||||||||||||       ||||||||||||||| || ||||||    
T  25912624 taaatggatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaata 25912676  T

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