View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_high_30 (Length: 227)
Name: NF3719_high_30
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40661873 - 40661967
Alignment:
| Q |
1 |
ttcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc |
95 |
Q |
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| T |
40661873 |
ttcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc |
40661967 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40675429 - 40675523
Alignment:
| Q |
1 |
ttcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc |
95 |
Q |
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| T |
40675429 |
ttctttaaaaagtacaaggtaatccacattcaacagaacatttgagtaaaatgcctttactctccaggtgcagagactccttgcttcagcctctc |
40675523 |
T |
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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 40662007 - 40662081
Alignment:
| Q |
135 |
gggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaat |
209 |
Q |
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| T |
40662007 |
gggagggagggccttctgtgcatagacgtagaccgcataatttccaatgagaaatgtcaacagcaacccaccaat |
40662081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 40675564 - 40675637
Alignment:
| Q |
136 |
ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaat |
209 |
Q |
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| T |
40675564 |
ggagggagggccttctgtgcataaacgtagagcgcgtaatttccaatgagaaatgtcaacagcaacccaccaat |
40675637 |
T |
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Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 40656603 - 40656691
Alignment:
| Q |
7 |
aaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc |
95 |
Q |
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| T |
40656603 |
aaaaagtacaaggtaatccacattccgtagaacatttgagtacattgcccctactctccaggtgcagagactccttgcttcagtctctc |
40656691 |
T |
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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 40656732 - 40656805
Alignment:
| Q |
136 |
ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaat |
209 |
Q |
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| T |
40656732 |
ggagggagggccttctgtgcataaacataaagcgcataatttccaatgaggaatgtcaacagcagcccaccaat |
40656805 |
T |
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