View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_low_1 (Length: 742)

Name: NF3719_low_1
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_low_1
NF3719_low_1
[»] chr3 (13 HSPs)
chr3 (18-732)||(1717455-1718169)
chr3 (520-732)||(1738952-1739164)
chr3 (74-262)||(1739395-1739583)
chr3 (95-244)||(1754877-1755026)
chr3 (74-252)||(1749254-1749432)
chr3 (556-732)||(1754123-1754300)
chr3 (607-732)||(1748807-1748932)
chr3 (359-440)||(46893416-46893497)
chr3 (359-413)||(13639459-13639513)
chr3 (288-440)||(54186928-54187080)
chr3 (359-440)||(29235677-29235758)
chr3 (359-427)||(48543213-48543281)
chr3 (359-428)||(20909363-20909432)
[»] chr8 (5 HSPs)
chr8 (358-440)||(30085447-30085529)
chr8 (359-440)||(33440574-33440655)
chr8 (359-440)||(28700583-28700664)
chr8 (359-437)||(6580862-6580939)
chr8 (361-411)||(31703822-31703872)
[»] chr4 (5 HSPs)
chr4 (358-443)||(51475233-51475318)
chr4 (359-427)||(31699549-31699617)
chr4 (359-423)||(37306476-37306540)
chr4 (358-435)||(6540258-6540335)
chr4 (359-413)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (359-426)||(709-776)
[»] chr5 (4 HSPs)
chr5 (359-443)||(41020248-41020332)
chr5 (359-421)||(42958487-42958549)
chr5 (359-427)||(5990589-5990657)
chr5 (359-427)||(18237206-18237274)
[»] chr1 (5 HSPs)
chr1 (359-414)||(932035-932090)
chr1 (367-440)||(11709656-11709729)
chr1 (359-440)||(19078941-19079022)
chr1 (359-440)||(19126829-19126910)
chr1 (361-427)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (358-440)||(17878710-17878792)
chr7 (359-427)||(557447-557515)
chr7 (358-414)||(47822035-47822091)
chr7 (359-440)||(43930030-43930110)
[»] chr2 (4 HSPs)
chr2 (361-427)||(5140042-5140108)
chr2 (367-443)||(864178-864254)
chr2 (359-427)||(6951739-6951808)
chr2 (345-438)||(16011989-16012082)
[»] chr6 (2 HSPs)
chr6 (359-440)||(7447636-7447716)
chr6 (360-440)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 18 - 732
Target Start/End: Complemental strand, 1718169 - 1717455
Alignment:
Q  18 attttactacagtagtcacagagcggatttgaattatgtactttaaagtaacattaatctttataacttgcagtaagcatgggatgaaagtgattgtgga 117  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1718169 attttactacagtagtcaccgagcggattttaattatgtactttaaagtaacattaatatttataacttgcagtaagcatgggatgaaagtgattgtgga 1718070  T
Q  118 tttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctct 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718069 tttgcatgcagttgaaggttctcaaaatggttttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctct 1717970  T
Q  218 gtcatagaattcttagcaaaaaggttttgtatctatatatctaaaatttattcatatattcctgaaacagaatgttaagaacactctcttactaacacnn 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| ||      
T  1717969 gtcatagaattcttagcaaaaaggttttgtatctatatatctaaaatttattcatatattcctcaggcagaatgttaagaacactctcttactaatactt 1717870  T
Q  318 nnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaa 417  Q
         |||| | || |||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1717869 tttctaacactcactctcgtattagatgaaatctatatggatctcaccactttatgtatgatccatttccaatatttgatatccacatgaatttcactaa 1717770  T
Q  418 ataagagagtagatgttagagagtgtacatggcattcctccttagacagaatgctaggaacactcttactagaactttctctaagattcactctccttat 517  Q
    |||||| ||| || |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  1717769 ataagaaagtggacgttagagaatgtacatagcatttctccttagacagaatgctaggaacactcttactggcactttctctaagattcactctccttat 1717670  T
Q  518 ttaaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggag 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717669 ttaaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggag 1717570  T
Q  618 gaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatac 717  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717569 gaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatac 1717470  T
Q  718 ttatgtgatgatgtc 732  Q
    ||||||||| |||||    
T  1717469 ttatgtgatcatgtc 1717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 520 - 732
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
Q  520 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 619  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  620 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 719  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  720 atgtgatgatgtc 732  Q
    ||||||| |||||    
T  1738964 atgtgatcatgtc 1738952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 74 - 262
Target Start/End: Complemental strand, 1739583 - 1739395
Alignment:
Q  74 atctttataacttgcagtaagcatgggatgaaagtgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatg 173  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  1739583 atctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagagatg 1739484  T
Q  174 gatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaa 262  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  1739483 gatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaaa 1739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 1755026 - 1754877
Alignment:
Q  95 catgggatgaaagtgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatggatatacagaatggggttatt 194  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||||| || |||||||||| | |    
T  1755026 catgggatgaaagtgattgtggacttgcatgcagttgaaggttctcaaaatggtaatgatcacagtggaacaagagatggatttatagaatggggtgaat 1754927  T
Q  195 catacattcctcagacagtctctgtcatagaattcttagcaaaaaggttt 244  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  1754926 catacatacctcagacagtctctgtcatagatttcctagcaaaaaggttt 1754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 1749432 - 1749254
Alignment:
Q  74 atctttataacttgcagtaagcatgggatgaaagtgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatg 173  Q
    |||||| ||| |||||| || |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||   ||| |||||||| ||||||||||    
T  1749432 atctttctaaattgcagaaatcatgagatgaaagtgattgtagatttgcatgctgttgaaggttctcaaaatggcaatgaacatagtggaacaagagatg 1749333  T
Q  174 gatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatcta 252  Q
    ||||||||||||||||| |||| ||||| |||||||||||  |||| || || ||||||||| ||||||||||||||||    
T  1749332 gatatacagaatggggtgattcttacatacctcagacagtagctgtgattgatttcttagcacaaaggttttgtatcta 1749254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 556 - 732
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
Q  556 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 654  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  655 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 732  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc 1754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 607 - 732
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
Q  607 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 706  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  707 atcccaaatacttatgtgatgatgtc 732  Q
    | |||| |  |||||||||| |||||    
T  1748832 aacccagaggcttatgtgatcatgtc 1748807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 440
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 413  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 288 - 440
Target Start/End: Original strand, 54186928 - 54187080
Alignment:
Q  288 aatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttcc 387  Q
    |||| ||||||||||||||| |||||||       |||||| || ||| |||| | |||||  ||| | |||||||||| |||||||| ||||||||||     
T  54186928 aatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttct 54187027  T
Q  388 aatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54187028 aatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 428  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  358 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 440
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 437
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 437  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  361 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 411  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  358 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 443  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 423  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  358 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 435  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 413  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

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Target: scaffold0922 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 426  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 359 - 443
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 443  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 421  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 414  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  367 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  361 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  358 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  358 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 414  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 440
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  361 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 427  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  367 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 443  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 427  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 438
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  345 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 438  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 440
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  359 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  360 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 440  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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