View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_low_10 (Length: 431)

Name: NF3719_low_10
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_low_10
NF3719_low_10
[»] chr3 (12 HSPs)
chr3 (1-295)||(55124005-55124299)
chr3 (294-378)||(5234722-5234806)
chr3 (294-378)||(20108062-20108146)
chr3 (296-387)||(12945472-12945563)
chr3 (296-378)||(29835777-29835859)
chr3 (296-378)||(29702392-29702474)
chr3 (306-378)||(39831204-39831276)
chr3 (294-383)||(55406377-55406465)
chr3 (382-421)||(55114311-55114350)
chr3 (309-378)||(31654619-31654689)
chr3 (296-378)||(33213418-33213500)
chr3 (334-386)||(49359629-49359681)
[»] chr7 (9 HSPs)
chr7 (294-383)||(34095848-34095937)
chr7 (294-378)||(6444158-6444242)
chr7 (294-378)||(47329661-47329745)
chr7 (306-378)||(45974452-45974524)
chr7 (306-378)||(29245281-29245353)
chr7 (334-388)||(31520862-31520916)
chr7 (345-386)||(8419407-8419448)
chr7 (334-382)||(37109846-37109894)
chr7 (334-382)||(37346996-37347044)
[»] chr4 (11 HSPs)
chr4 (294-378)||(45988119-45988203)
chr4 (294-378)||(42063006-42063090)
chr4 (294-378)||(47028103-47028187)
chr4 (296-378)||(24226873-24226955)
chr4 (309-377)||(55917405-55917473)
chr4 (306-378)||(20135440-20135512)
chr4 (296-378)||(15530063-15530145)
chr4 (312-381)||(28683090-28683158)
chr4 (309-378)||(42980257-42980327)
chr4 (334-381)||(9139247-9139294)
chr4 (334-390)||(25701221-25701277)
[»] scaffold0896 (1 HSPs)
scaffold0896 (294-378)||(1943-2027)
[»] scaffold0662 (1 HSPs)
scaffold0662 (294-378)||(6982-7066)
[»] chr6 (3 HSPs)
chr6 (294-378)||(7124337-7124421)
chr6 (296-381)||(945095-945180)
chr6 (294-374)||(4181239-4181319)
[»] chr1 (9 HSPs)
chr1 (294-378)||(45319610-45319694)
chr1 (296-381)||(49410520-49410605)
chr1 (297-390)||(47036264-47036357)
chr1 (306-378)||(12983549-12983621)
chr1 (306-378)||(45346267-45346339)
chr1 (309-372)||(22105401-22105464)
chr1 (335-380)||(39249551-39249596)
chr1 (334-390)||(32267021-32267077)
chr1 (334-382)||(47682626-47682674)
[»] chr2 (10 HSPs)
chr2 (294-387)||(33751500-33751593)
chr2 (294-378)||(37080722-37080806)
chr2 (306-383)||(17692623-17692700)
chr2 (294-378)||(7091106-7091190)
chr2 (306-383)||(37259669-37259746)
chr2 (306-378)||(16431880-16431952)
chr2 (306-384)||(14805571-14805649)
chr2 (296-381)||(30778292-30778377)
chr2 (306-367)||(15332762-15332823)
chr2 (334-382)||(26357576-26357624)
[»] chr5 (9 HSPs)
chr5 (296-383)||(40321492-40321579)
chr5 (296-378)||(41405995-41406077)
chr5 (296-383)||(31480458-31480545)
chr5 (296-378)||(1836012-1836094)
chr5 (296-378)||(39885834-39885916)
chr5 (296-381)||(6767925-6768010)
chr5 (306-378)||(24782712-24782784)
chr5 (334-381)||(5112441-5112488)
chr5 (334-382)||(7693229-7693277)
[»] chr8 (9 HSPs)
chr8 (294-378)||(3877572-3877656)
chr8 (306-378)||(533713-533785)
chr8 (296-381)||(30089182-30089270)
chr8 (306-378)||(13800643-13800715)
chr8 (296-372)||(1786495-1786571)
chr8 (334-388)||(6098662-6098716)
chr8 (334-379)||(465843-465888)
chr8 (334-390)||(4108913-4108969)
chr8 (308-379)||(30936662-30936734)
[»] scaffold0166 (1 HSPs)
scaffold0166 (306-378)||(25095-25167)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 55124005 - 55124299
Alignment:
Q  1 ttagtttggttttggcatattctttgtgtgtgatcagcattttcgcaagttcgtatggatcaagttatttttcttcataaaatagatataagcttttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  55124005 ttagtttggttttggcatattctttgtgtgtgatcagcattttcgcaagttcgtatggatcaagttatttttcttcatagaatagatataagcttttcac 55124104  T
Q  101 ttttcgcactcttgtttattttaccatcgcatgtattgttgttaaattccaaaacgtccaacgtttccttatatcaagaacaagaaagaaatcaaattat 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55124105 ttttcgcactcttgttttttttaccatcgcatgtattgttgttaaattccaaaacgtccaacgtttccttatatcaagaacaagaaagaaatcaaattat 55124204  T
Q  201 atgagcaagtatattatgtgcaatgttgggctaaaatacattatgccaaatttctaatgtgtatatatctatatttatatctgtatggtatttaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55124205 atgagcaagtatattatgtgcaatgttgggctaaaatacattatgctaaatttctaatgtgtatatatctatatttatatctgtatggtatttaa 55124299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 5234722 - 5234806
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5234722 aacacacatgacacatggcgcattattattgaatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaattt 5234806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 20108062 - 20108146
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| || |||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||| |||||    
T  20108062 aacacacatgacatatggcgcattattattggatgtaagataacttcaccaaaaaagtcaattgaataacttcaccatagaattt 20108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 12945472 - 12945563
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatt 387  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| ||||| || |||||    
T  12945472 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccctttatt 12945563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 29835777 - 29835859
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||  ||||| ||||||||||||| ||||||| ||||||||   |||||||||||||||||||||||||||| |||||    
T  29835777 cacacatgccatgtgacgcattattattggatgtagggtaacttcactgaaaaagtcaattgaatgacttcaccatagaattt 29835859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 29702474 - 29702392
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| || |||| |||||||||||||| |||| |||||||| | |||||||||||||||  ||||||||||| |||||    
T  29702474 cacacatgacatatggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaattt 29702392  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 39831276 - 39831204
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| ||||||||||||| |    |||||||||||| ||||||||||||||| |||||    
T  39831276 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaattt 39831204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 55406377 - 55406465
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 383  Q
    ||||||||||||| ||||| ||||||||||| ||||||| |||||||| | ||||| |||||||||  |||| |||||  ||||||||||    
T  55406377 aacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaa-tcaattgaacaactttaccatcgaattttccat 55406465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 55114350 - 55114311
Alignment:
Q  382 attattttaatcacaattcacgaggaaacacacaggttct 421  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  55114350 attattttaatcacaattcacgaggaaacacacagcttct 55114311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 31654689 - 31654619
Alignment:
Q  309 tggcgcattattattgaat-gtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    |||| ||||||||||| || |||||||||||||| | ||||||| ||||||||||||||||| || |||||    
T  31654689 tggcacattattattggatcgtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaattt 31654619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 33213500 - 33213418
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| || || | ||||||||||| ||||| | |||||||| | |||||||||||| |||||||| |||||| |||||    
T  33213500 cacacatgacatatgacacattattattggatgtatggtaacttcatcgaaaaagtcaattaaatgactttaccatagaattt 33213418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 49359629 - 49359681
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattat 386  Q
    ||||||||  |||||||||| ||  |||||||||||||| |||||||||||||    
T  49359629 taacttcacaaaaaaagtcattttcatgacttcaccatagaattttccattat 49359681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 34095848 - 34095937
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 383  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  34095848 aacacacatgacacgtggcgcattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcccat 34095937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 6444158 - 6444242
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  6444158 aacacacatgacatgtggcgcattattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccatagaattt 6444242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 47329661 - 47329745
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  47329661 aacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaattt 47329745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 45974452 - 45974524
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  45974452 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 45974524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 29245281 - 29245353
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||| ||||||||||| |||||    
T  29245281 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaattt 29245353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 31520862 - 31520916
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattattt 388  Q
    |||||||| ||||||||||| ||  ||||||||| ||||||||||||| ||||||    
T  31520862 taacttcaccaaaaaagtcattttcatgacttcatcataaaattttccgttattt 31520916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 8419407 - 8419448
Alignment:
Q  345 aaaaagtcaattgaatgacttcaccataaaattttccattat 386  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  8419407 aaaaagtcaattgaagaacttcaccataaaattttcctttat 8419448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 37109894 - 37109846
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 382  Q
    |||||||| ||||||||||| ||  |||||||||||||| |||||||||    
T  37109894 taacttcaccaaaaaagtcatttttatgacttcaccatagaattttcca 37109846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 37347044 - 37346996
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 382  Q
    |||||||| ||||||| ||| ||  ||||||||||||||||||||||||    
T  37347044 taacttcaccaaaaaaatcattttcatgacttcaccataaaattttcca 37346996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 45988203 - 45988119
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  45988203 aacacacatgacatgtggcgcatcattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccataaaattt 45988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 42063090 - 42063006
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  42063090 aacacacatgacacgtggcgtattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 42063006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 47028187 - 47028103
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| | | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  47028187 aacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 47028103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 24226955 - 24226873
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| |||||    
T  24226955 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaattt 24226873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 55917473 - 55917405
Alignment:
Q  309 tggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaatt 377  Q
    ||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||||||| ||||    
T  55917473 tggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatt 55917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 20135440 - 20135512
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| ||||||||||||| |    |||||||||||| ||||||||||||||| |||||    
T  20135440 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaattt 20135512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 15530145 - 15530063
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| ||||| | |||| ||||||||| |||| |||||||| | |||||||||||||||  ||||||||||| |||||    
T  15530145 cacacatgacatgtgacacatttttattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaattt 15530063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 28683090 - 28683158
Alignment:
Q  312 cgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    ||||||||||||| ||||||||||||||| ||  ||||||||||| || |||||||||||| ||||||||    
T  28683090 cgcattattattggatgtaggataacttc-accgaaaagtcaatttaaggacttcaccatagaattttcc 28683158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 42980257 - 42980327
Alignment:
Q  309 tggcgcattattattgaat-gtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    |||| ||||||||||| || |||||||||||||| | ||||||| ||||||||||||||||| || |||||    
T  42980257 tggcacattattattggatcgtaggataacttcatcgaaaaagttaattgaatgacttcaccgtagaattt 42980327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 9139294 - 9139247
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    |||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  9139294 taacttcaccaaaaaagtcaatttcatgacttcaccatagaattttcc 9139247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 25701221 - 25701277
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 390  Q
    |||||| | ||||||||||| |   ||||||||||||||||||||||| ||||||||    
T  25701221 taactttaccaaaaaagtcattatcatgacttcaccataaaattttcctttatttta 25701277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 1943 - 2027
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| || |||||    
T  1943 aacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaattt 2027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 7066 - 6982
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| | | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  7066 aacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 7124421 - 7124337
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| || |||||    
T  7124421 aacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaattt 7124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 945095 - 945180
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    ||||||||| ||||| ||||||||||||||||||||  |||||||| ||||||||||||||||   ||||||||||| ||||||||    
T  945095 cacacatgacatgtgacgcattattattgaatgtagagtaacttcatcaaaaaagtcaattgaggaacttcaccatagaattttcc 945180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 4181239 - 4181319
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaa 374  Q
    ||||||||||| |  || ||||||||||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  4181239 aacacacatgacacatgacgcattattattggatgtaggataacttcataaaaaaagtcaattgaataacttcaccataaa 4181319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 45319694 - 45319610
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    |||||| |||| | ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||    
T  45319694 aacacaaatgacacgtggcgcattattattgaatgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 45319610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 49410520 - 49410605
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||| | ||||||||| |||||  ||||||||||| ||||||||    
T  49410520 cacacatgacatgtggcgcattattattggatgtagggtaacttcaccgaaaaagtcatttgaagaacttcaccatagaattttcc 49410605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 47036264 - 47036357
Alignment:
Q  297 acacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 390  Q
    |||||||| ||||| ||||||||||||| ||||| | ||||||||   || ||||||||||||||||||||||||| ||||| || ||||||||    
T  47036264 acacatgacatgtgacgcattattattggatgtatggtaacttcattgaagaagtcaattgaatgacttcaccatagaatttccctttatttta 47036357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 12983549 - 12983621
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||| | ||||||||||||| |||||    
T  12983549 atgtggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaattt 12983621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 45346339 - 45346267
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| |||||||||||| || |||||    
T  45346339 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaattt 45346267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 22105464 - 22105401
Alignment:
Q  309 tggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccata 372  Q
    |||||||||||||||| |||||||||||||||| | |||||||||||||||  |||||| ||||    
T  22105464 tggcgcattattattggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcata 22105401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 39249551 - 39249596
Alignment:
Q  335 aacttcaacaaaaaagtcaattgaatgacttcaccataaaattttc 380  Q
    ||||||| ||||||||| ||||||| |||||||||||| |||||||    
T  39249551 aacttcaccaaaaaagttaattgaaggacttcaccatagaattttc 39249596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 32267077 - 32267021
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 390  Q
    ||||||||  |||||||||| |   ||||||||||||||||||||||| ||||||||    
T  32267077 taacttcacaaaaaaagtcattcttatgacttcaccataaaattttcctttatttta 32267021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 47682626 - 47682674
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 382  Q
    |||||||| ||||||||||| |   ||||||||||||||||||||||||    
T  47682626 taacttcaccaaaaaagtcactctcatgacttcaccataaaattttcca 47682674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 33751593 - 33751500
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatt 387  Q
    ||||||| ||||||||||| ||||||||||| ||||||| |||||||| | ||||||||||||||| |||||||||||| ||||| ||||||||    
T  33751593 aacacacgtgatatgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttcccattatt 33751500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 37080722 - 37080806
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  37080722 aacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaattt 37080806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 17692623 - 17692700
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 383  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| ||||||||||    
T  17692623 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttccat 17692700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 7091106 - 7091190
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||| ||||| ||||| ||||||||||| ||||||| |||||||| | ||||||||||||||| |||||||||||| |||||    
T  7091106 aacacacgtgatacgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaattt 7091190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 37259746 - 37259669
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 383  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| ||||| ||||    
T  37259746 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccat 37259669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 16431880 - 16431952
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  16431880 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 16431952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 14805649 - 14805571
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccatt 384  Q
    ||||||||||||||||||| |||||||||||||||    ||||| |||||| ||||||||||||||| ||||| |||||    
T  14805649 atgtggcgcattattattggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaatttcccatt 14805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 30778377 - 30778292
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    ||||||||| ||||||| ||||||||||||||||||  |||||||| | |||||||||||| ||  |||||||| || ||||||||    
T  30778377 cacacatgacatgtggcacattattattgaatgtagagtaacttcatcgaaaaagtcaattaaagaacttcaccgtagaattttcc 30778292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 15332762 - 15332823
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttca 367  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||    
T  15332762 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttca 15332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 26357624 - 26357576
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 382  Q
    |||||||| || |||||||| ||  ||||||||||||||||||||||||    
T  26357624 taacttcatcagaaaagtcattttcatgacttcaccataaaattttcca 26357576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 40321492 - 40321579
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 383  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| ||||| ||||    
T  40321492 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttcccat 40321579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 41406077 - 41405995
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||| |||||    
T  41406077 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaattt 41405995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 31480545 - 31480458
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccat 383  Q
    ||||||||| ||||| ||||||||||||| ||||||| |||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  31480545 cacacatgacatgtgacgcattattattggatgtagggtaacttcaccgaaaaagtcaattgaatgacttctccatagaatttcccat 31480458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 1836012 - 1836094
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| | ||||| |||||||||  ||||||||||| |||||    
T  1836012 cacacatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaaatcaattgaacaacttcaccatagaattt 1836094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 39885834 - 39885916
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||| ||||||| |||||||||||||| |||| |||||||| | |||||||||||||||  ||||||||||| |||||    
T  39885834 cacacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaattt 39885916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 6768010 - 6767925
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    ||||||||| ||||||||||||||||||| ||||||  |||||||| | ||||||||||||||   ||||||||||| ||||||||    
T  6768010 cacacatgacatgtggcgcattattattggatgtagagtaacttcaccgaaaaagtcaattgaggaacttcaccatagaattttcc 6767925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 24782784 - 24782712
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  24782784 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 24782712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 5112441 - 5112488
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    |||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  5112441 taacttcaccaaaaaagtcattttcatgacttcaccataaaattttcc 5112488  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 7693277 - 7693229
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcca 382  Q
    |||||||| || |||||||| || ||||||||||||||| |||||||||    
T  7693277 taacttcaccagaaaagtcattttaatgacttcaccatagaattttcca 7693229  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 3877656 - 3877572
Alignment:
Q  294 aacacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||| ||||| ||||||||||| ||||||| |||||||| | ||||| ||||||||| |||||||||||| |||||    
T  3877656 aacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaaatcaattgaacgacttcaccatagaattt 3877572  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 533713 - 533785
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  533713 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 533785  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 30089182 - 30089270
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtagga---taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttcc 381  Q
    ||||||||| ||||||| ||||||||||| ||||||||   ||||||||   ||||||||||||||| |||||||||||| ||||||||    
T  30089182 cacacatgacatgtggcacattattattggatgtaggaggataacttcactgaaaaagtcaattgaaagacttcaccatagaattttcc 30089270  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 13800715 - 13800643
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||| ||||||||||||| ||||||  ||||||||   |||||||||||||||||||||||||||| |||||    
T  13800715 atgtgacgcattattattggatgtagagtaacttcactgaaaaagtcaattgaatgacttcaccatagaattt 13800643  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 1786571 - 1786495
Alignment:
Q  296 cacacatgatatgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccata 372  Q
    ||||||||| | ||||||||||||||||  ||||| | ||||||||  ||||||||||||||||  |||||||||||    
T  1786571 cacacatgacacgtggcgcattattattagatgtatggtaacttcacaaaaaaagtcaattgaacaacttcaccata 1786495  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 6098662 - 6098716
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattattt 388  Q
    |||||||| ||||||||| | ||  |||||||||||||| |||||||||||||||    
T  6098662 taacttcaccaaaaaagttattttcatgacttcaccatagaattttccattattt 6098716  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 465888 - 465843
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaatttt 379  Q
    |||||||| || |||||||| || ||||||||||||||||||||||    
T  465888 taacttcaccacaaaagtcattttaatgacttcaccataaaatttt 465843  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 4108913 - 4108969
Alignment:
Q  334 taacttcaacaaaaaagtcaattgaatgacttcaccataaaattttccattatttta 390  Q
    |||||| | ||||||||||| ||  ||||||||||||||||||||||| || |||||    
T  4108913 taactttaccaaaaaagtcattttcatgacttcaccataaaattttcctttctttta 4108969  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 30936734 - 30936662
Alignment:
Q  308 gtggcgcattattattgaatgtaggat-aacttcaacaaaaaagtcaattgaatgacttcaccataaaatttt 379  Q
    ||||| ||||||||||| ||||||||| || || | | |||||||||||| ||| ||||||||||| ||||||    
T  30936734 gtggcacattattattggatgtaggattaattttaccgaaaaagtcaattaaataacttcaccatagaatttt 30936662  T

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Target: scaffold0166 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 25167 - 25095
Alignment:
Q  306 atgtggcgcattattattgaatgtaggataacttcaacaaaaaagtcaattgaatgacttcaccataaaattt 378  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||||| ||||||||||||||| |||||    
T  25167 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 25095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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