View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_11 (Length: 431)
Name: NF3719_low_11
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 138 - 416
Target Start/End: Original strand, 51179376 - 51179654
Alignment:
| Q |
138 |
ttttgtcattgatctgaagaatcgagaagttggctccatggaagacggttgagcagtgcttcaagtatgttcatggaatggtacctacaaacactccaac |
237 |
Q |
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| T |
51179376 |
ttttgtcattgatctgaagaatcgagaagttggctccatggaagacggttgagcagtgcttcaagtatgttgatggaatggtacctgcaaacactccaac |
51179475 |
T |
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| Q |
238 |
atccatgtaagtaagtgaagcggaagtaagagatacgtggaattgaaagtgtacctttctctccaactcatgtggttcttatagttggactgaagagatt |
337 |
Q |
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| T |
51179476 |
atccatgtaagtaagtgaagcggaagtaagagatacgtggaatagaaagtgtacctttctctccatctcatgtggttcttatagttggactgaagagatt |
51179575 |
T |
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| Q |
338 |
tccaagaattgggcgcttaatgaccgaattcgtaacagtttttacgtctccttaacattcgcccttgtccccgcctttg |
416 |
Q |
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| T |
51179576 |
tccaagaattgggcgcttaatgaccgaattcgtaacagtttttacgtctccttaacattcgcccttgtccccgcctttg |
51179654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 51179239 - 51179293
Alignment:
| Q |
1 |
cattcatacactgtcaaagaaaccaaaatcatgtgtgcattattctttcccactc |
55 |
Q |
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| T |
51179239 |
cattcatacactgtcaaataaaccaaaatcatgtatgcattattctttcccactc |
51179293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 136 - 416
Target Start/End: Complemental strand, 14182981 - 14182695
Alignment:
| Q |
136 |
cgttttgtcattgatctgaa--gaatcgagaagttggctccatggaagacggttgagcagtgcttcaagtatgttcatggaatggtacctacaaacactc |
233 |
Q |
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|||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||| ||||||||| |
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| T |
14182981 |
cgttctgtcattgatctgaactggatcgagaagttggctccgtggaagacggttgagcagtatttcaagtatgttgatggggaagtacctgcaaacactc |
14182882 |
T |
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| Q |
234 |
caacatccatgtaagtaagtgaagcggaagtaagagatacgtggaattgaaa----gtgtacctttctctccaactcatgtggttcttatagttggactg |
329 |
Q |
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| T |
14182881 |
cgacatccatgtaagtaaacgaagcggaagtaagagatacatggaatagagaaagtgtgtacctttctctccatctcatgtggttcttatagttgccctg |
14182782 |
T |
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| Q |
330 |
aagagatttccaagaattgggcgcttaatgaccgaattcgtaacagtttttacgtctccttaacattcgcccttgtccccgcctttg |
416 |
Q |
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| T |
14182781 |
aggagatttccaagagttgagcgtttaacgactgaatttgtaacagtttttacgtctccttaatattcgcccttgtccccgcctttg |
14182695 |
T |
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