View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_low_12 (Length: 403)

Name: NF3719_low_12
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_low_12
NF3719_low_12
[»] chr2 (21 HSPs)
chr2 (21-375)||(14494438-14494792)
chr2 (21-346)||(14501925-14502250)
chr2 (17-346)||(14476122-14476451)
chr2 (21-348)||(14484984-14485311)
chr2 (21-342)||(14481308-14481629)
chr2 (29-347)||(14144664-14144982)
chr2 (46-347)||(14162223-14162524)
chr2 (21-342)||(14165288-14165609)
chr2 (29-375)||(14152646-14152992)
chr2 (236-323)||(14575161-14575248)
chr2 (264-323)||(14552198-14552257)
chr2 (263-323)||(15023623-15023683)
chr2 (276-326)||(14520122-14520172)
chr2 (236-311)||(14567209-14567284)
chr2 (273-323)||(14850744-14850794)
chr2 (277-319)||(15004186-15004228)
chr2 (270-310)||(14524880-14524920)
chr2 (271-304)||(13707181-13707214)
chr2 (263-319)||(14512269-14512325)
chr2 (263-319)||(14528719-14528775)
chr2 (263-319)||(14542945-14543001)
[»] chr3 (1 HSPs)
chr3 (264-323)||(38525073-38525132)
[»] chr4 (1 HSPs)
chr4 (276-319)||(49553376-49553419)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 14494438 - 14494792
Alignment:
Q  21 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 120  Q
    |||||||||||||| | ||||||| |||| ||||||||||||||| |||||||||||||||| ||||  |||||||| |||||||||| |||||||||||    
T  14494438 ttttctctccatttatgcaccaacgcttctgattcaacctcttttgctgtctcatacctcattcacaagtttgggtttgacccacaatctgcttccaaac 14494537  T
Q  121 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 220  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||||||| ||  ||||||| | |||    
T  14494538 tctgctccacttacaagctctgttttaagaatgcccaaaaacctgactctgttctcaacttctttaggaaccatggtttctctgattcccaactgcacga 14494637  T
Q  221 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 320  Q
    ||  ||||| ||    ||| |||| |||||||   | |||||||||||| |  | || |||||||||||||||||||||||||| |||||||||||||||    
T  14494638 taccattgccaagatgccagggctgctttcctgtaacccctccaaaagggtgttgcccaagtttcaattttttctctccaaaggcgcttctacctctgac 14494737  T
Q  321 attattaaccttgtcagtaagaaccctacagtactttctgcaagcctcaacaatc 375  Q
    ||| ||||||||||  |||||||||||| |||  | |||| ||||||||| ||||    
T  14494738 attgttaaccttgtttgtaagaaccctagagtcttgtctgtaagcctcaagaatc 14494792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 21 - 346
Target Start/End: Original strand, 14501925 - 14502250
Alignment:
Q  21 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 120  Q
    |||||||| ||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||| ||| |||||| || ||||||||||||||||||||||    
T  14501925 ttttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatttgcttccaaac 14502024  T
Q  121 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 220  Q
    |||||||||| ||||||||| ||||  | |||| |||||| ||||| ||||||||||| ||||| |||||| ||||||||||  || ||||||||||       
T  14502025 tctgctccacctacaagctccgtttcaagactgaccaaaaccctgattctgttctcaaattctttagaaactatggtttctctaactcccaactacgtcg 14502124  T
Q  221 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 320  Q
    ||| ||| | ||  ||||| ||||||| |||| ||| |||||||||||| |  | || ||||||||||||||||||||||||||||||||||||||||||    
T  14502125 tatcattcccaaggcaccatggctactctcctgcgacccctccaaaagggtgttgccgaagtttcaattttttctctccaaaggtgcttctacctctgac 14502224  T
Q  321 attattaaccttgtcagtaagaaccc 346  Q
    ||| ||||| || | |||||||||||    
T  14502225 attgttaactttatgagtaagaaccc 14502250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 14476451 - 14476122
Alignment:
Q  17 acccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttcc 116  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||| || |||||||||| |||||||    
T  14476451 accctttcctctccatttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatctgcttcc 14476352  T
Q  117 aaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactac 216  Q
    ||||| | ||||||||||||  |   |||  | | |||||||||||||||||||||||||| |||||| |||||| |||||||||||||  |||||||||    
T  14476351 aaactttcctccacttacaatgttactttcaagaatgcccaaaaacctgactctgttctcaccttctttagaaactatggtttctcagattcccaactac 14476252  T
Q  217 gcgatatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctc 316  Q
    |  |||  ||| ||||   |||| |||| ||||||| | | || || |||||| || | |||||||||||||||||||||||||||||||||||||| ||    
T  14476251 gtcataccatttcaaaggaaccatggctgctttcctgcaacccttctaaaagggttttgccaaagtttcaattttttctctccaaaggtgcttctacatc 14476152  T
Q  317 tgacattattaaccttgtcagtaagaaccc 346  Q
    ||||||| ||||| || ||| |||||||||    
T  14476151 tgacattgttaacattatcactaagaaccc 14476122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 14484984 - 14485311
Alignment:
Q  21 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 120  Q
    ||||||| | |||||||||||||| ||||||||||||||| |||| | ||||| ||||||||| ||| |||||| ||   ||||||||||||||||||||    
T  14484984 ttttctcactatttttccaccaacacttcagattcaaccttttttgccgtctcttacctcatcaacaattttggcttttccccacaatttgcttccaaac 14485083  T
Q  121 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 220  Q
    | | ||||||||||||  |   |||  ||||||||| ||||||||| || |||||||||||||| ||||||||||||||||| ||  ||||| |||||      
T  14485084 tttcctccacttacaatgttcatttcaaaactgcccgaaaacctgattcagttctcaacttctttagaaaccatggtttctctgattcccaaatacgcac 14485183  T
Q  221 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 320  Q
    | | ||||||||   |||| || | ||||| | ||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  14485184 tgtcattgcaaaggaaccacggttgctttcatgcgatcccttgaaaagggttctgccaaagtttcaattttttctctccaaaggtgcttctaactctgac 14485283  T
Q  321 attattaaccttgtcagtaagaacccta 348  Q
    ||| ||||| |||| |||||||||||||    
T  14485284 attgttaacattgttagtaagaacccta 14485311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 14481629 - 14481308
Alignment:
Q  21 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 120  Q
    |||||||| | ||||| ||||||  |||||||||||||||||||| | ||||||||||||||| ||| |||||| ||   ||||||||||||||||||||    
T  14481629 ttttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtctcatacctcatcaacaattttggcttttccccacaatttgcttccaaac 14481530  T
Q  121 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 220  Q
    | || |||||||||||| | |||||  ||||   |||||||||||| || ||| |||||||||| ||||||||||||||||||||||| |||||| |  |    
T  14481529 tttgttccacttacaaggtttgtttcaaaaccaaccaaaaacctgattcagttgtcaacttctttagaaaccatggtttctcagacactcaactatgtca 14481430  T
Q  221 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 320  Q
    ||| ||   |||   |||| | || ||||||| | | |||| ||||| | |  | |||||||||||||||| ||||||||||||||||||||||||||||    
T  14481429 tatcatcataaaggaaccacgacttctttcctgcaagccctgcaaaacgttgttgccaaagtttcaattttgtctctccaaaggtgcttctacctctgac 14481330  T
Q  321 attattaaccttgtcagtaaga 342  Q
    ||||||||  ||||| ||||||    
T  14481329 attattaaaattgtctgtaaga 14481308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 14144664 - 14144982
Alignment:
Q  29 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 128  Q
    |||||| | ||||||| |||||||||||||||||||| | | ||| |||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  14144664 ccatttctgcaccaacccttcagattcaacctcttttgcagcctcctacctcattcacaattttgggtttgacccacaatttgcttccaaactatgctcc 14144763  T
Q  129 acttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattg 228  Q
    ||| |    ||  ||||  |  |  ||||||||||||| |||||| ||| |||||| |||||| ||||||| |||||  |||||||||| ||| ||||||    
T  14144764 actcatcgtcttcgtttcaattccacccaaaaacctgaatctgttgtcaccttctttagaaactatggtttttcagattcccaactacgtgatctgattg 14144863  T
Q  229 caaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaa 328  Q
    | ||    ||| |||| ||||||| | | |||| ||||| | |  | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14144864 ctaagatgccagggcttctttcctgcaaacccttcaaaacggtgttgccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaa 14144963  T
Q  329 ccttgtcagtaagaaccct 347  Q
    ||||||  |||||||||||    
T  14144964 ccttgtgtgtaagaaccct 14144982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 46 - 347
Target Start/End: Complemental strand, 14162524 - 14162223
Alignment:
Q  46 cttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctccacttacaagctctgttt 145  Q
    ||||||||||| | || |||  ||| || || |||||||| | |||||| |||  ||||||||||||||| ||||||| |||| |||||||  |  ||||    
T  14162524 cttcagattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttgcttctaaactcttctcctcttacaatgttcgttt 14162425  T
Q  146 tgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggcta 245  Q
      | ||||| ||||||||||| ||||||||||  ||||| ||||  ||||||||||| ||| ||||| || |  ||||||||   ||  ||||| |||||    
T  14162424 caacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctctgactcccaattatgtcatatgattatcaaggcaccatggcta 14162325  T
Q  246 ctttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaacc 345  Q
    ||||||| ||| |||||||||||| |  | ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  14162324 ctttcctgcgacccctccaaaagggtgttgccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaaccttgtcagtaagagcc 14162225  T
Q  346 ct 347  Q
    ||    
T  14162224 ct 14162223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 14165609 - 14165288
Alignment:
Q  21 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 120  Q
    |||||||| ||||| | ||||||| ||||| |||||||||| ||| | | ||| |||||||| |||| |||||||||   ||||||||||||||||||||    
T  14165609 ttttctctacatttctgcaccaacacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaaac 14165510  T
Q  121 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 220  Q
    |||| ||| || ||   ||  ||||  | ||  ||||||||||||| ||||||||||  ||||| |||||| |||||||||| ||  ||||||||||| |    
T  14165509 tctgttccgctcaccgtcttcgtttcaagaccacccaaaaacctgaatctgttctcacattctttagaaactatggtttctctgaatcccaactacgcca 14165410  T
Q  221 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 320  Q
    ||||||| | ||     |  |||| ||||| | |||||||||||||||| |  |  |||||||||||||||||||||||||||||||||||| |||||||    
T  14165409 tatgattcccaagatgtcgcggctgctttcttgcgatccctccaaaagggtgttagcaaagtttcaattttttctctccaaaggtgcttctaactctgac 14165310  T
Q  321 attattaaccttgtcagtaaga 342  Q
    ||| |||||||||||| |||||    
T  14165309 attgttaaccttgtcactaaga 14165288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 14152646 - 14152992
Alignment:
Q  29 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 128  Q
    |||||| | ||||||| ||||||||||||||||| || | ||||| ||||||||| ||| |||||| || |||||||||| ||||||||||||||| |||    
T  14152646 ccatttctgcaccaacacttcagattcaacctctcttgcagtctcctacctcatcaacaattttggttttgacccacaatctgcttccaaactctgttcc 14152745  T
Q  129 acttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattg 228  Q
    || ||| | ||  ||||  | ||  ||||||||||||| ||| ||||||  ||||| |||||| |||| |||||  |  ||||||||||| |||||||||    
T  14152746 acctaccatcttcgtttcaagaccacccaaaaacctgaatcttttctcacattctttagaaactatggattctctaattcccaactacgccatatgattg 14152845  T
Q  229 caaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaa 328  Q
    | ||    |||  ||| ||| ||| | | ||||||||||   |  | ||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||    
T  14152846 ccaagatgccagagctgcttacctgcaaaccctccaaaactgtgttgccaaagtttcaatttttcctctccagaggcgcttctacctctgacattgttaa 14152945  T
Q  329 ccttgtcagtaagaaccctacagtactttctgcaagcctcaacaatc 375  Q
    | ||||||  |||| ||||| |||  | | || ||||||||||||||    
T  14152946 cattgtcaccaagagccctagagtcttgtatgtaagcctcaacaatc 14152992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 14575161 - 14575248
Alignment:
Q  236 accaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 323  Q
    |||| |||| ||||||| |||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14575161 accatggcttctttcctgcgatacccacaaaagaattctcccaaagtttcaatttttactctccaaaggtgcttctacctctgacatt 14575248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 14552198 - 14552257
Alignment:
Q  264 aaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 323  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  14552198 aaaaggattctcccaaagtttcaatttttactctccataggtgcttcttcctctgacatt 14552257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 15023623 - 15023683
Alignment:
Q  263 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 323  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  15023623 caaaacgattctcccaaagtttcaatttttactctccaaaggcgcttctacttctgacatt 15023683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 14520122 - 14520172
Alignment:
Q  276 ccaaagtttcaattttttctctccaaaggtgcttctacctctgacattatt 326  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  14520122 ccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattatt 14520172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 14567209 - 14567284
Alignment:
Q  236 accaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttct 311  Q
    |||| |||| ||||||| |||| ||  ||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  14567209 accatggcttctttcctgcgatacccacaaaacgattctaccaaagtttcaatttttactcgccaaaggtgcttct 14567284  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 14850794 - 14850744
Alignment:
Q  273 ctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 323  Q
    |||||||||||||| |||||  ||||||||||||||||| |||||||||||    
T  14850794 ctcccaaagtttcagtttttaatctccaaaggtgcttcttcctctgacatt 14850744  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 15004228 - 15004186
Alignment:
Q  277 caaagtttcaattttttctctccaaaggtgcttctacctctga 319  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  15004228 caaagtttcaattttttctatccaaaggtgcttcttcctctga 15004186  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 14524880 - 14524920
Alignment:
Q  270 attctcccaaagtttcaattttttctctccaaaggtgcttc 310  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  14524880 attcttccaaagtttcaattttttctatccaaaggtgcttc 14524920  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 13707214 - 13707181
Alignment:
Q  271 ttctcccaaagtttcaattttttctctccaaagg 304  Q
    |||||||||||||||||||||| |||||||||||    
T  13707214 ttctcccaaagtttcaatttttactctccaaagg 13707181  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 14512269 - 14512325
Alignment:
Q  263 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 319  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14512269 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14512325  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 14528719 - 14528775
Alignment:
Q  263 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 319  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14528719 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14528775  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 14542945 - 14543001
Alignment:
Q  263 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 319  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14542945 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14543001  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 38525132 - 38525073
Alignment:
Q  264 aaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 323  Q
    |||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||    
T  38525132 aaaaggattctcccaaagtttcaatttttaatctccaaaggtgtttttacctctgacatt 38525073  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 49553376 - 49553419
Alignment:
Q  276 ccaaagtttcaattttttctctccaaaggtgcttctacctctga 319  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  49553376 ccaaagtttcaatttttactctccaaaggtgcttctacttctga 49553419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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