View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_14 (Length: 401)
Name: NF3719_low_14
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 50844209 - 50843837
Alignment:
| Q |
13 |
aaggctatggatgaagatgaggagnnnnnnntagagaaagcagagattagggctaagaaggccctcactcgttttctccgtagtctttcagagaatattg |
112 |
Q |
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| T |
50844209 |
aaggctacggatgaagatgaggagaaaaaaatagaaaaggcagagattagggctaagaaggccctcactcgttttctccgtagtctttcagagaatattg |
50844110 |
T |
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| Q |
113 |
ttgatgaacattagacattgttaaccatgcattgttttgttgggatacatgatatgaaaatatattatttttaatagttagaatagtgaatggttgagtt |
212 |
Q |
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| T |
50844109 |
ttgatgaacattagacattgttaaccatgcattgttttgttgggatacatgatatgaaaatatattatttttaatagttagaatagtgaatggttgagtt |
50844010 |
T |
|
| Q |
213 |
tttgtttagaatgatcattacatttatgtcgcagtcctctaaaaagatttgtacaaggttcataataatcctgactggtttatttgaatgaccatctaat |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50844009 |
tttgtttagaatgatcattacatttatgttgcagtcctctaaaaagatttgtactaggttcataataatcctgactggtttatttgaatgaccatctaat |
50843910 |
T |
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| Q |
313 |
tttcttagcgtcacaatgatatcggtagtcagctaagcaattttatgccctctcaaagattgtgaaatgcttg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843909 |
tttcttagcgtcacaatgatatcggtagtcagctaagcaattttatgccctctcaaagattgtgaaatgcttg |
50843837 |
T |
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