View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_16 (Length: 395)
Name: NF3719_low_16
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 25813541 - 25813330
Alignment:
| Q |
14 |
cagagagttctggaagcatattgttttggtggtttatttcaactacaaaaatatatttgattgaagtttgcttctgcagggttatcttttttatgtgtga |
113 |
Q |
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| T |
25813541 |
cagagagttctggaagcatattgttttggtggtttatttcacctacaaaa-tatatttgagtgaagtttgcttctgcagggttatcttttttatgtgtga |
25813443 |
T |
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| Q |
114 |
aagttgttatatgatggatacattttatagttttat---------aattaaggacttgattgttgattatcaatcaatacgtttggtatgaaaagttgtg |
204 |
Q |
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| T |
25813442 |
aagttgttatatgatggatacattttatagttttataagtcagagaattaacgacttgattgttgattatcaatcaatacgtttggtatgaaaaattgtg |
25813343 |
T |
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| Q |
205 |
tcaattgatattg |
217 |
Q |
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| T |
25813342 |
tcagttgatattg |
25813330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 25813272 - 25813109
Alignment:
| Q |
215 |
ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgcctacttccttgcaaccgttgaaatgaattgaagtattt |
314 |
Q |
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| T |
25813272 |
ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgcctacttccttgcaaccgttgaaatgaattgaagtattt |
25813173 |
T |
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| Q |
315 |
gacaatattgaaatgtctaaattatgtagtacatgcagataaattcggtatttgatttgatgag |
378 |
Q |
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| T |
25813172 |
gacaatattgaaatgtctaaattatgtggtacatacagataaattcgatatttgatttgatgag |
25813109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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