View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_17 (Length: 370)
Name: NF3719_low_17
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 34958235 - 34957875
Alignment:
| Q |
1 |
gaatttgttgtatcagcaccagataat-----gttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaag |
95 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
34958235 |
gaatttgttgtatcagcaccagataatataatgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaag |
34958136 |
T |
|
| Q |
96 |
atagaaactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtgg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958135 |
atagaaactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtgg |
34958036 |
T |
|
| Q |
196 |
attcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccgcttcatttagtttccctgatttcc |
295 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34958035 |
attcttgcagcaccaagaagcgcccctcaaacggatccatcagcttcaaatggaatggaattcataagttccaccgcttcatttagtttccctaatttcc |
34957936 |
T |
|
| Q |
296 |
aaggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957935 |
aaggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
34957875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 3922412 - 3922584
Alignment:
| Q |
2 |
aatttgttgtatcagcaccagataatgttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagatagaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3922412 |
aatttgttgtatcagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaa |
3922511 |
T |
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| Q |
102 |
actcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttca |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3922512 |
actcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttca |
3922584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 172 - 356
Target Start/End: Original strand, 50131576 - 50131761
Alignment:
| Q |
172 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | |
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| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcggcttcaaatggaatggaattcacaagctccactg |
50131675 |
T |
|
| Q |
272 |
cttcatttagtttccctgat-ttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
356 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50131676 |
cttcatttagtttccctgatcttccaaggagatcaatcatgcaagcatggtgctcttgtgttggtttgattccaaacttttcctcc |
50131761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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