View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3719_low_18 (Length: 363)
Name: NF3719_low_18
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 3990763 - 3991097
Alignment:
| Q |
13 |
catcaaacaaacatgtttatatattggacgatcatgtcttctgagccatgtttttaatcttccttcaggtatacgatatttgccactcatatggagaata |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990763 |
catcaaacaaacatgtttatatattggacaatcatgtcttctgagccatgtttttaatcttccttcaggtatacgatatttgccactcatatggagaata |
3990862 |
T |
|
| Q |
113 |
tagcggaattagcaacaatctatcccaacgtgaaaattctccactttcatgtcgaattaaaaaacaaccatttggagttcaaggtagtatctctgttttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990863 |
tagcggaattagcaacaatctatcccaacgtgaaaattctccactttcatgtcgaattaaaaaacaaccatttggagttcaaggtagtatctctgttttt |
3990962 |
T |
|
| Q |
213 |
tctcttgcattggatgactatctgcaaactaatattcttctttacttagtttcaacttaaggaaggaccgaaacatatcccccattatggccttctctta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990963 |
tctcttgcattggatgactatctgcaaactaatattcttctttacttagtttcaacttaaggaaggaccgaaacatatcccccattatggccttctctta |
3991062 |
T |
|
| Q |
313 |
gcagaagttgcaggattaccaacctccgttattga |
347 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
3991063 |
gcagaagtggcaggattaccaacctccgttattga |
3991097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 17936062 - 17935988
Alignment:
| Q |
261 |
gtttcaacttaaggaaggaccgaaacatatcccccattatggccttctcttagcagaagttgcaggattaccaac |
335 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
17936062 |
gtttcaacttaaggagtgaccgaaacatagcccccattatggccttctcttcgcataagtgaaaggattaccaac |
17935988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University