View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_19 (Length: 358)
Name: NF3719_low_19
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_19 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 201 - 343
Target Start/End: Original strand, 51034016 - 51034158
Alignment:
| Q |
201 |
gttaatcattgaagaagtaaacttggttctggaagtttattttctttcttgagggaaaggttctggaagttatgaagtgctttgttctagagattaacaa |
300 |
Q |
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| T |
51034016 |
gttaatcatcgaagaagtaaacttggttctggaagtttattttctttcttgagggaaaggttctggaagttatgaagtgcttccttctagagattaacaa |
51034115 |
T |
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| Q |
301 |
tttcaatctcccattcatgttctatttctttgttgactctgtg |
343 |
Q |
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| T |
51034116 |
tttcaatctccccttcatgttctatttctttgttgactctgtg |
51034158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 51033836 - 51033952
Alignment:
| Q |
18 |
agaagaatattttgcgtgcgttatttcaaattcaactatactacagaggtttgttcaaattctactatgatatagtgctatagaggcgtttattttctct |
117 |
Q |
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| T |
51033836 |
agaagaatattttgcgtgcgttatttcaaattcaactatacta--gaggtttgttcaaattctactatgatatagtgcaatagaggcgtttattttctct |
51033933 |
T |
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| Q |
118 |
tgctttccctcttcctatt |
136 |
Q |
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| T |
51033934 |
tgctttccctcttcctatt |
51033952 |
T |
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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 18699756 - 18699894
Alignment:
| Q |
202 |
ttaatcattgaagaagtaaacttggttctggaagtttattttctttcttgagggaaaggttctggaagttatgaagtgctttgttctagagattaacaat |
301 |
Q |
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| T |
18699756 |
ttaattatcgaagaagtaaatttggttctggaagtttattttctttcttgagggaatggttctggaagttatgaagtgcttccttctagagatctacaat |
18699855 |
T |
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| Q |
302 |
ttcaatctcccattcatgttctatttctttgttgactct |
340 |
Q |
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| T |
18699856 |
ttcaaactccccttcatgttatatatctttgttgactct |
18699894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 1910 - 2019
Alignment:
| Q |
231 |
ggaagtttattttctttcttgagggaaaggttctggaagttatgaagtgctttgttctagagattaacaatttcaatctcccattcatgttctatttctt |
330 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| || |||||||||||||||| |||||||| |||||||| |
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| T |
1910 |
ggaagtttattttctttcttgagggaaaggttctcgaagttattaagtgcttccttctagatatctacaatttcaatctccccttcatgttatatttctt |
2009 |
T |
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| Q |
331 |
tgttgactct |
340 |
Q |
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|||||||||| |
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| T |
2010 |
tgttgactct |
2019 |
T |
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