View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_21 (Length: 326)
Name: NF3719_low_21
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 46442728 - 46443030
Alignment:
| Q |
17 |
accttggtcaaaaaagccacgaaattgttaagtattatccacattcggatatttcaatgcacaagcaattcctaaccataactaaacaccatatcaaact |
116 |
Q |
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| T |
46442728 |
accttgttcaaaaaagccacgaaattgttaagtattatccacattcggatatttcaatgcacaagtaattcctaaccataactaaacaccatatcaaact |
46442827 |
T |
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| Q |
117 |
tgaccaaattgaaattcaaaacataaagggtagactaattcctccacaccataacacatcacacatgactgtgaatccattgataaaatgtaatgactaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46442828 |
tgaccaaattgaaattcaaaacataaagggtagactaattcctccacaccataacacatcacacatgactgtgaatccattgataaaatgtaacgactaa |
46442927 |
T |
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| Q |
217 |
acaaattaaccattttgtacattattcatgaaaccccttacaaactgaca-nnnnnnnnagaagattcattgtttataccttttcaaaactattgatgat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
46442928 |
acaaattaaccattttgtacattattcatgaaaccccttacaaacagacatttttttttagaagattcattgtttataccttttcaaaactattgataat |
46443027 |
T |
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| Q |
316 |
gtc |
318 |
Q |
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||| |
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| T |
46443028 |
gtc |
46443030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 46430178 - 46430255
Alignment:
| Q |
161 |
cacaccataacacatcaca----catgactgtgaatccattgataaaatgtaatgactaaacaaattaaccattttgt |
234 |
Q |
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||||||||||||||||||| ||||| ||| ||||| || ||||||||||| || |||||||||||| ||| |||| |
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| T |
46430178 |
cacaccataacacatcacacatgcatgattgttaatccgtttataaaatgtaacgagtaaacaaattaatcatcttgt |
46430255 |
T |
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