View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_22 (Length: 315)
Name: NF3719_low_22
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 46018918 - 46019209
Alignment:
| Q |
17 |
gtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaaatcatatgaaatagtatcaaacaac |
116 |
Q |
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| T |
46018918 |
gtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaaatcatatgaaatagtatcaaacaac |
46019017 |
T |
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| Q |
117 |
caaattaataacttcaagatcaaagtagagaatcattactgaacacaataacatttcaaacaacagtatattttcttacatttcttaatgaatcttcatt |
216 |
Q |
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| T |
46019018 |
caaattaataacttcaagatcaaagtagagaatcattactgaacacaataatatttcaaacaacagtatattttcttacatttcttaatgaatcttcatt |
46019117 |
T |
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| Q |
217 |
agttatcaacagctgcaaaaagtccttaatagtgtgtattccatccgaggccaactgcttgtcaagtgttccatctctacgtattcatctca |
308 |
Q |
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| T |
46019118 |
agttatcaacagctgcaaaaaatccttaatagtgtgtattccatccaaggccaactgcttgtcaagtgttccatctctacgtattcctctca |
46019209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 46031701 - 46031821
Alignment:
| Q |
164 |
ataacatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccg |
263 |
Q |
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| T |
46031701 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
46031800 |
T |
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| Q |
264 |
aggccaactgcttgtcaagtg |
284 |
Q |
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| T |
46031801 |
atgccaacagcttgtcaagtg |
46031821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 46031563 - 46031637
Alignment:
| Q |
18 |
tttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaaa |
92 |
Q |
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|||||||||||||| |||| | |||||| | |||| || ||||| |||||||||||||||||||||||||||| |
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| T |
46031563 |
tttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagccaaaaa |
46031637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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