View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3719_low_3 (Length: 657)

Name: NF3719_low_3
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3719_low_3
NF3719_low_3
[»] chr1 (28 HSPs)
chr1 (16-362)||(48589655-48590002)
chr1 (16-362)||(48594739-48595086)
chr1 (16-362)||(48599350-48599697)
chr1 (367-640)||(48594116-48594388)
chr1 (367-640)||(48598727-48598999)
chr1 (367-643)||(48589026-48589305)
chr1 (483-643)||(50164597-50164757)
chr1 (482-643)||(50164236-50164397)
chr1 (485-639)||(48153051-48153205)
chr1 (483-603)||(28371631-28371751)
chr1 (482-595)||(2820957-2821070)
chr1 (483-595)||(12800406-12800518)
chr1 (483-595)||(12799989-12800101)
chr1 (483-595)||(2821425-2821537)
chr1 (482-595)||(33631026-33631139)
chr1 (483-595)||(43756283-43756395)
chr1 (480-595)||(38469221-38469336)
chr1 (482-600)||(28371198-28371316)
chr1 (482-595)||(38328822-38328935)
chr1 (483-595)||(43755849-43755961)
chr1 (481-595)||(38468904-38469018)
chr1 (481-546)||(17151864-17151929)
chr1 (481-549)||(33630475-33630543)
chr1 (511-595)||(38328415-38328499)
chr1 (482-543)||(17151001-17151062)
chr1 (510-545)||(32537672-32537707)
chr1 (483-545)||(32538488-32538550)
chr1 (509-538)||(45065378-45065407)
[»] chr8 (14 HSPs)
chr8 (480-643)||(14197656-14197819)
chr8 (485-643)||(39439760-39439918)
chr8 (485-643)||(39440487-39440644)
chr8 (483-595)||(37657847-37657959)
chr8 (483-595)||(30846016-30846128)
chr8 (483-595)||(41714603-41714715)
chr8 (482-595)||(30846432-30846545)
chr8 (526-595)||(41715203-41715272)
chr8 (483-542)||(31408164-31408223)
chr8 (526-595)||(37658480-37658549)
chr8 (505-549)||(42573602-42573646)
chr8 (509-546)||(35759223-35759260)
chr8 (509-546)||(41348171-41348208)
chr8 (509-545)||(41092199-41092235)
[»] chr3 (30 HSPs)
chr3 (489-636)||(38000187-38000334)
chr3 (481-643)||(14788488-14788650)
chr3 (484-619)||(42257215-42257350)
chr3 (481-643)||(14788272-14788434)
chr3 (483-595)||(930369-930481)
chr3 (482-595)||(11442091-11442204)
chr3 (483-595)||(21166092-21166204)
chr3 (483-595)||(32473761-32473873)
chr3 (482-595)||(929910-930023)
chr3 (482-595)||(32474398-32474511)
chr3 (481-595)||(43521075-43521186)
chr3 (480-595)||(26006714-26006829)
chr3 (484-595)||(50766631-50766740)
chr3 (482-595)||(5113197-5113310)
chr3 (498-595)||(11441664-11441761)
chr3 (483-595)||(20586520-20586632)
chr3 (483-595)||(24394670-24394782)
chr3 (480-595)||(5113644-5113759)
chr3 (481-595)||(36992109-36992223)
chr3 (481-595)||(37017549-37017663)
chr3 (509-611)||(42257982-42258083)
chr3 (483-595)||(20586072-20586184)
chr3 (510-595)||(45000763-45000848)
chr3 (483-595)||(24394247-24394359)
chr3 (483-595)||(26006146-26006258)
chr3 (484-595)||(45000316-45000427)
chr3 (482-595)||(43104713-43104826)
chr3 (481-532)||(50836214-50836265)
chr3 (481-532)||(50839588-50839639)
chr3 (487-524)||(24181950-24181987)
[»] chr5 (16 HSPs)
chr5 (480-636)||(42655635-42655791)
chr5 (483-595)||(5620805-5620917)
chr5 (481-595)||(12330598-12330712)
chr5 (482-595)||(3595776-3595889)
chr5 (483-595)||(8321323-8321435)
chr5 (482-595)||(7858326-7858439)
chr5 (483-595)||(12330148-12330260)
chr5 (502-595)||(16996965-16997058)
chr5 (483-595)||(8320875-8320987)
chr5 (483-595)||(24027187-24027299)
chr5 (510-595)||(24027622-24027707)
chr5 (483-595)||(29759597-29759709)
chr5 (484-595)||(3596229-3596340)
chr5 (481-595)||(7858755-7858869)
chr5 (482-547)||(31078455-31078520)
chr5 (482-540)||(36912245-36912302)
[»] chr4 (22 HSPs)
chr4 (485-643)||(52532125-52532283)
chr4 (482-643)||(52532318-52532479)
chr4 (482-643)||(5259216-5259377)
chr4 (483-595)||(19860330-19860442)
chr4 (482-595)||(19860808-19860921)
chr4 (482-595)||(20174969-20175082)
chr4 (482-595)||(5235373-5235486)
chr4 (482-595)||(6934438-6934551)
chr4 (482-595)||(6933820-6933933)
chr4 (482-595)||(5235822-5235935)
chr4 (480-595)||(30213851-30213966)
chr4 (509-549)||(46764279-46764319)
chr4 (509-546)||(11680303-11680340)
chr4 (509-546)||(11688582-11688619)
chr4 (509-546)||(25655623-25655660)
chr4 (509-549)||(31910581-31910621)
chr4 (504-546)||(12590187-12590229)
chr4 (535-595)||(20175361-20175421)
chr4 (489-622)||(39412771-39412905)
chr4 (483-545)||(3167463-3167525)
chr4 (509-553)||(3847913-3847957)
chr4 (482-545)||(39413607-39413670)
[»] scaffold0095 (1 HSPs)
scaffold0095 (485-643)||(42820-42977)
[»] chr7 (23 HSPs)
chr7 (521-641)||(35211940-35212060)
chr7 (482-595)||(20559745-20559858)
chr7 (482-595)||(20560217-20560330)
chr7 (482-600)||(42901067-42901185)
chr7 (483-595)||(33139774-33139886)
chr7 (483-595)||(33140230-33140342)
chr7 (483-595)||(4179637-4179749)
chr7 (482-595)||(4180274-4180387)
chr7 (483-603)||(42900647-42900767)
chr7 (481-595)||(30414179-30414293)
chr7 (483-595)||(40641106-40641218)
chr7 (481-595)||(25137410-25137524)
chr7 (483-595)||(40640653-40640762)
chr7 (483-595)||(25137860-25137973)
chr7 (483-544)||(33686926-33686987)
chr7 (509-546)||(29006374-29006411)
chr7 (509-546)||(29007183-29007220)
chr7 (508-545)||(41224828-41224865)
chr7 (482-545)||(33687735-33687798)
chr7 (480-553)||(42607078-42607151)
chr7 (510-543)||(35613231-35613264)
chr7 (509-546)||(44896073-44896110)
chr7 (509-545)||(29314608-29314644)
[»] chr6 (17 HSPs)
chr6 (480-595)||(28983228-28983343)
chr6 (481-595)||(34717691-34717805)
chr6 (489-618)||(28535376-28535506)
chr6 (483-595)||(19062759-19062871)
chr6 (482-595)||(34717241-34717354)
chr6 (481-595)||(7635571-7635685)
chr6 (483-595)||(28982782-28982893)
chr6 (482-595)||(7635123-7635236)
chr6 (483-595)||(18290431-18290543)
chr6 (482-595)||(18290214-18290327)
chr6 (482-551)||(2924952-2925021)
chr6 (482-595)||(4348846-4348959)
chr6 (510-595)||(12999413-12999498)
chr6 (509-546)||(10608304-10608341)
chr6 (484-528)||(14496445-14496489)
chr6 (489-622)||(18605767-18605901)
chr6 (509-546)||(930950-930988)
[»] chr2 (18 HSPs)
chr2 (483-595)||(3705337-3705449)
chr2 (483-595)||(16681566-16681678)
chr2 (481-595)||(3705760-3705876)
chr2 (483-595)||(30899390-30899502)
chr2 (482-595)||(15561976-15562089)
chr2 (482-595)||(16903833-16903946)
chr2 (482-595)||(16992327-16992441)
chr2 (483-595)||(6609979-6610091)
chr2 (483-595)||(7994509-7994621)
chr2 (482-595)||(15561540-15561653)
chr2 (510-595)||(7994082-7994167)
chr2 (482-577)||(37996537-37996632)
chr2 (510-595)||(16903425-16903509)
chr2 (483-595)||(30899837-30899949)
chr2 (484-595)||(6609552-6609663)
chr2 (509-566)||(16682231-16682288)
chr2 (482-546)||(34617652-34617716)
chr2 (509-545)||(40992249-40992285)
[»] scaffold0508 (2 HSPs)
scaffold0508 (480-595)||(4130-4245)
scaffold0508 (483-595)||(4560-4672)
[»] scaffold0022 (2 HSPs)
scaffold0022 (482-595)||(61573-61686)
scaffold0022 (529-595)||(62023-62089)
[»] scaffold0006 (1 HSPs)
scaffold0006 (510-595)||(202219-202304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (480-554)||(22203-22278)
[»] scaffold0155 (1 HSPs)
scaffold0155 (509-545)||(17366-17402)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 48590002 - 48589655
Alignment:
Q  16 ataagtaaggaacctgacaagaatgattaatatcattaccgtttttgcagtaaagaacaatgacaaggaaaaaatattattcatttataaaaatgatgtc 115  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  48590002 ataagtaaggaacctgacaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaatattattaatttataaaaatgatgtc 48589903  T
Q  116 aaacctgcataacaggtattctattattgctatttggtcccccacaacccctaaacattggaatttttagcaccataaaaggcgaattattaccccaata 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48589902 aaacctgcataacaggtattctattattgctatttggtccccaacaacccctaaacattgggatttttagcaccataaaaggcgaattattaccccaata 48589803  T
Q  216 ttgaatctaaaaacaaagtatcactattgagacaaaattcgcttattttagtatca-aaaataactatttttagggtaataaacatgagttggaatcaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48589802 ttgaatctaaaaacaaagtatcactattgagacaaaattcacatattttagtatcaaaaaataactatttttagggtaataaacatgagttggaatcaaa 48589703  T
Q  315 gttgcgataaatgtaaaaacagattaccagaaagttcaattacgaaaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48589702 gttgcgataaatgtaaaaacagattaccagaaagttcaattacgaaaa 48589655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 48595086 - 48594739
Alignment:
Q  16 ataagtaaggaacctgacaagaatgattaatatcattaccgtttttgcagtaaagaacaatgacaaggaaaaaatattattcatttataaaaatgatgtc 115  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  48595086 ataagtaaggaacctgacaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaatattattaatttataaaaatgatgtc 48594987  T
Q  116 aaacctgcataacaggtattctattattgctatttggtcccccacaacccctaaacattggaatttttagcaccataaaaggcgaattattaccccaata 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48594986 aaacctgcataacaggtattctattattgctatttggtccccaacaacccctaaacattgggatttttagcaccataaaaggcgaattattaccccaata 48594887  T
Q  216 ttgaatctaaaaacaaagtatcactattgagacaaaattcgcttattttagtatca-aaaataactatttttagggtaataaacatgagttggaatcaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48594886 ttgaatctaaaaacaaagtatcactattgagacaaaattcacatattttagtatcaaaaaataactatttttagggtaataaacatgagttggaatcaaa 48594787  T
Q  315 gttgcgataaatgtaaaaacagattaccagaaagttcaattacgaaaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48594786 gttgcgataaatgtaaaaacagattaccagaaagttcaattacgaaaa 48594739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 48599697 - 48599350
Alignment:
Q  16 ataagtaaggaacctgacaagaatgattaatatcattaccgtttttgcagtaaagaacaatgacaaggaaaaaatattattcatttataaaaatgatgtc 115  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  48599697 ataagtaaggaacctgacaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaatattattaatttataaaaatgatgtc 48599598  T
Q  116 aaacctgcataacaggtattctattattgctatttggtcccccacaacccctaaacattggaatttttagcaccataaaaggcgaattattaccccaata 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48599597 aaacctgcataacaggtattctattattgctatttggtccccaacaacccctaaacattgggatttttagcaccataaaaggcgaattattaccccaata 48599498  T
Q  216 ttgaatctaaaaacaaagtatcactattgagacaaaattcgcttattttagtatca-aaaataactatttttagggtaataaacatgagttggaatcaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48599497 ttgaatctaaaaacaaagtatcactattgagacaaaattcacatattttagtatcaaaaaataactatttttagggtaataaacatgagttggaatcaaa 48599398  T
Q  315 gttgcgataaatgtaaaaacagattaccagaaagttcaattacgaaaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48599397 gttgcgataaatgtaaaaacagattaccagaaagttcaattacgaaaa 48599350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 367 - 640
Target Start/End: Complemental strand, 48594388 - 48594116
Alignment:
Q  367 aattatatgataatattaatttgtattgcaaataatctaagtaaaataacctcaannnnnnnnnnnaagaaatcaaaatggtatatattgaatcaactga 466  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||||    
T  48594388 aattatatgataatattaatttatattgcaaataatctaagtaaaaaaacctcaattttttttgt-aagaaatcaaaatggtatatattgaatcaactga 48594290  T
Q  467 ctatccccctggcataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatc 566  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  48594289 ctatccccctggcataggtgaggtttagcattggaaagctacttttttcccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatc 48594190  T
Q  567 cttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttatt 640  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48594189 cttatcatactccctcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttatt 48594116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 367 - 640
Target Start/End: Complemental strand, 48598999 - 48598727
Alignment:
Q  367 aattatatgataatattaatttgtattgcaaataatctaagtaaaataacctcaannnnnnnnnnnaagaaatcaaaatggtatatattgaatcaactga 466  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||||    
T  48598999 aattatatgataatattaatttatattgcaaataatctaagtaaaaaaacctcaattttttttgt-aagaaatcaaaatggtatatattgaatcaactga 48598901  T
Q  467 ctatccccctggcataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatc 566  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  48598900 ctatccccctggcataggtgaggtttagcattggaaagctacttttttcccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatc 48598801  T
Q  567 cttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttatt 640  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48598800 cttatcatactccctcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttatt 48598727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 367 - 643
Target Start/End: Complemental strand, 48589305 - 48589026
Alignment:
Q  367 aattatatgataatattaatttgtattgcaaataatctaagtaaaataa-cctcaannnnnnnnnnnaagaaatcaaaatggtatatattgaatcaactg 465  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||           || ||||||||||||||||||||||||||||||    
T  48589305 aattatatgataatattagtttgtattgcaaataatctaagtaaaagaaacctcaatttttaaaaaaaataaatcaaaatggtatatattgaatcaactg 48589206  T
Q  466 actatccccctggcataggtgaggtttagcaagggaaagctaattttttc--ccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacac 563  Q
    ||||||||||||||||| ||||||||||||| |||||| ||| ||||||   | ||||||||||| |||||||| ||| |||| |||||| |||||||||    
T  48589205 actatccccctggcatatgtgaggtttagcatgggaaaactactttttttttctaccatgggaaaattagttttcgacgattagatcaaatcaagaacac 48589106  T
Q  564 atccttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48589105 atccttatcatacttcataatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 48589026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 483 - 643
Target Start/End: Complemental strand, 50164757 - 50164597
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||| | |||||| ||| |||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||    
T  50164757 ggtgaggtttagtatgggaaaactactttttttccaccataggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactccttc 50164658  T
Q  583 atcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50164657 atcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 50164597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 482 - 643
Target Start/End: Original strand, 50164236 - 50164397
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| | |    
T  50164236 aggtgaggtttagcatgggaaaactacttttttcccactatgggaaagttagtttatgaccattagatcaaaccaagaatacatccttatcatactccct 50164335  T
Q  582 catcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50164336 cattactagattttcttcttttgtcttcaacctcataaccatcaaccaagacggttattatt 50164397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 485 - 639
Target Start/End: Complemental strand, 48153205 - 48153051
Alignment:
Q  485 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 584  Q
    |||||||||||| |||||||||| ||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||    
T  48153205 tgaggtttagcatgggaaagctacttttttcccaatatgggaaagttagtttttgatcattagatcaaaccaagaacacatccttatcatactccttcat 48153106  T
Q  585 cactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttat 639  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  48153105 cactagattttcttcttttgtcttcaatctcacaaccatcaatcaagacggttat 48153051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 483 - 603
Target Start/End: Complemental strand, 28371751 - 28371631
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||    
T  28371751 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctc 28371652  T
Q  583 atcactagattttcttctttt 603  Q
    |||||||||||||||||||||    
T  28371651 atcactagattttcttctttt 28371631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 2820957 - 2821070
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |    
T  2820957 aggtgaggtttaacatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccct 2821056  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  2821057 catcactagatttt 2821070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 12800518 - 12800406
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  12800518 ggtgaggtttagcatgggaaaactacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 12800419  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  12800418 atcactagatttt 12800406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 12799989 - 12800101
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||| | |||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||    
T  12799989 ggtgaggtttagtatgggaaagctactttttttctaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatacttcctc 12800088  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  12800089 atcactagatttt 12800101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 2821537 - 2821425
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||| | | |||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  2821537 ggtgaggtttagtatgagaaaactacttttttcccaccatgggaaagttaatttttgaccattagatcaaaccaagaacacatccttatcatactccctc 2821438  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  2821437 atcactagatttt 2821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 33631139 - 33631026
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||| ||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||| | |    
T  33631139 aggtgagatttagcatgggaaaactacttttttcccaccatgggaaaattagtttttgaccattagatcaaacgaagaacacatccttaccatactccct 33631040  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  33631039 catcactagatttt 33631026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 43756395 - 43756283
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |    
T  43756395 ggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccct 43756297  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  43756296 catcactagatttt 43756283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 480 - 595
Target Start/End: Complemental strand, 38469336 - 38469221
Alignment:
Q  480 ataggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 578  Q
    |||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||     
T  38469336 ataggtgaagtttagcatgggaaaggctaattttttcc-accatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactc 38469238  T
Q  579 catcatcactagatttt 595  Q
    |||||||||||||||||    
T  38469237 catcatcactagatttt 38469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 600
Target Start/End: Original strand, 28371198 - 28371316
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||| | ||||||| || |||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||   |    
T  28371198 aggtgaggtttagtatgggaaagttacttttttcctaccatgaaaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactctct 28371297  T
Q  582 catcactagattttcttct 600  Q
    |||||||||||||||||||    
T  28371298 catcactagattttcttct 28371316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 38328935 - 38328822
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |     
T  38328935 aggtgaagtttagcatgggaaagactaattttt-cccatcatgggaaagttagtttttaatcattagatcaaaccaagaacacatccttatcatactccc 38328837  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  38328836 tcatcactagatttt 38328822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 43755849 - 43755961
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  43755849 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 43755947  T
Q  582 catcactagatttt 595  Q
    ||||| ||||||||    
T  43755948 catcattagatttt 43755961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 595
Target Start/End: Original strand, 38468904 - 38469018
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| |||||| |    
T  38468904 taggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattatattaaatcaagaacacatccttaccatactcc 38469002  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  38469003 ctcatcactagatttt 38469018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 546
Target Start/End: Complemental strand, 17151929 - 17151864
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccatta 546  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  17151929 taggtgaggtttagcatgggaaagctactttttttccaccatgggaaagttagtttttgaccatta 17151864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 33630475 - 33630543
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaat 549  Q
    |||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  33630475 taggtgaggtttagcatgggaaagctacttattttccaccatgggaaagttagtttttgaccattaaat 33630543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 511 - 595
Target Start/End: Original strand, 38328415 - 38328499
Alignment:
Q  511 ttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    |||||| | ||||| ||||||||||||| ||||||| ||||||||||||||| ||||||| |||||| | |||||||||||||||    
T  38328415 ttttcctatcatggaaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccctcatcactagatttt 38328499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 543
Target Start/End: Original strand, 17151001 - 17151062
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgacca 543  Q
    ||||||||||||||| |||||||     ||||||||||||||||||||||| ||||||||||    
T  17151001 aggtgaggtttagcatgggaaaggctggtttttcccaccatgggaaagttattttttgacca 17151062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 545
Target Start/End: Original strand, 32537672 - 32537707
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccatt 545  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32537672 tttttcccaccatgggaaagttagtttttaaccatt 32537707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 32538550 - 32538488
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccatt 545  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||||||| ||||||    
T  32538550 ggtgaagtttagcatgggaaaggctaattttt-cccaccatggaaaagttagtttttaaccatt 32538488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Complemental strand, 45065407 - 45065378
Alignment:
Q  509 ttttttcccaccatgggaaagttagttttt 538  Q
    ||||||||||||||||||||||||||||||    
T  45065407 ttttttcccaccatgggaaagttagttttt 45065378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 480 - 643
Target Start/End: Original strand, 14197656 - 14197819
Alignment:
Q  480 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |    
T  14197656 ataggtgaggtttagcatgggaaagttacttttttcccaccatgggaaagttagtttttgaccattagatcaaagcaagaacacatccttatcatactcc 14197755  T
Q  580 atcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14197756 ctcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaatacggttattatt 14197819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 485 - 643
Target Start/End: Original strand, 39439760 - 39439918
Alignment:
Q  485 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 584  Q
    |||||||||| | || ||||||| |||||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||    
T  39439760 tgaggtttagtatggaaaagctacttttttcccatcatagaaaagttagtttttgactattagatcaaaccaagaacacatccttatcatactccctcat 39439859  T
Q  585 cactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39439860 cactagattttcttcttttgtctccaacctcacaaccatcaaccaagacggttattatt 39439918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 485 - 643
Target Start/End: Complemental strand, 39440644 - 39440487
Alignment:
Q  485 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 584  Q
    |||||||||||| | |||| ||| |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  39440644 tgaggtttagcatgagaaaactacttttttcc-accataaaaaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcat 39440546  T
Q  585 cactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39440545 cactagattttcttcttttgtcttcaacctcacaaccatcaatcaagacggttattatt 39440487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 37657847 - 37657959
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||    
T  37657847 ggtgaggtttagcatgggaaagctactttttttctaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatctttatcatactccctc 37657946  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  37657947 atcactagatttt 37657959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 30846016 - 30846128
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  30846016 ggtgaagtttagcatgggaaagactaatttt-tcccaccataggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 30846114  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  30846115 catcactagatttt 30846128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 41714603 - 41714715
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| ||||||  || ||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||| | | ||    
T  41714603 ggtgaggtttagcatgggaaagctatttttttttcatcatgaaaaagttagtttttgatcattagatcaaaccaagaacacatccttatcataatccctc 41714702  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  41714703 atcactagatttt 41714715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 30846545 - 30846432
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||| |||||| |     
T  30846545 aggtgaagtttagcatgggaaaggctaattttttcc-accatgggaaaattagtttttaaccattagatcaaaccaagaacatatccttaccatactccc 30846447  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  30846446 tcatcactagatttt 30846432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 41715272 - 41715203
Alignment:
Q  526 aaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  41715272 aaagttagtttttgaccattagatcaaaccaagaacatatccttatcatactccatcatcactagatttt 41715203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 483 - 542
Target Start/End: Complemental strand, 31408223 - 31408164
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgacc 542  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  31408223 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgacc 31408164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 37658549 - 37658480
Alignment:
Q  526 aaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||||||| ||||||| ||||||| |||||||| |||||| |||||| | |||| ||||||||||    
T  37658549 aaagttagttttttaccattagatcaaacgaagaacacgtccttaccatactccttcattactagatttt 37658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 549
Target Start/End: Original strand, 42573602 - 42573646
Alignment:
Q  505 ctaattttttcccaccatgggaaagttagtttttgaccattaaat 549  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  42573602 ctaattttttcccaccatgagaaaattagtttttgaccattaaat 42573646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 35759260 - 35759223
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  35759260 tttttccccaccatgggaaagttagtttttaaccatta 35759223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 41348171 - 41348208
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41348171 tttttccccaccatgggaaagttagtttttaaccatta 41348208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 545
Target Start/End: Original strand, 41092199 - 41092235
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  41092199 ttttttcccaccatggaaaagttagtttttaaccatt 41092235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 489 - 636
Target Start/End: Complemental strand, 38000334 - 38000187
Alignment:
Q  489 gtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcact 588  Q
    |||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  38000334 gtttagcatgggaaagctgcttttttcccaccatggaaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcctcatcact 38000235  T
Q  589 agattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 636  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38000234 agattttcttcttttgtcttcaacctcacaaccattaaccaagacggt 38000187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 481 - 643
Target Start/End: Complemental strand, 14788650 - 14788488
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    ||||||||||||| || |||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||     
T  14788650 taggtgaggtttaacatgggaaagctacttttttcctatcatgggaaagttagtttttgaccattagatcaaaccaagaagacattcttatcatacttcc 14788551  T
Q  581 tcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14788550 tcatcgctagattttcttcttttgtcttcaacctcacaaccatcaatcaagacggttattatt 14788488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 484 - 619
Target Start/End: Original strand, 42257215 - 42257350
Alignment:
Q  484 gtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatca 583  Q
    ||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||    
T  42257215 gtgaggtttagcatgggaaaactacttttttcccaccatggaaaagttagtttttgaccattaaatcaaaccaagaacacatctttatcatactccctca 42257314  T
Q  584 tcactagattttcttcttttgtcttcaacctcacaa 619  Q
    ||||||||||||||||||||||||||||||||||||    
T  42257315 tcactagattttcttcttttgtcttcaacctcacaa 42257350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 481 - 643
Target Start/End: Original strand, 14788272 - 14788434
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaatttttt-cccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    |||||||||||||||| |||||| ||| |||||| |||||||||  ||||||||||||||||||||| | ||||||||||||||||| |||||||||| |    
T  14788272 taggtgaggtttagcatgggaaatctactttttttcccaccatga-aaagttagtttttgaccattagaacaaaccaagaacacatctttatcatactcc 14788370  T
Q  580 atcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
     ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14788371 ctcatcactaaattttcttcttttgtcttcaacctcagaaccatcaaccaagacggttattatt 14788434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 930481 - 930369
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  930481 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 930382  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  930381 atcactagatttt 930369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 11442204 - 11442091
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |    
T  11442204 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcatactccct 11442105  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  11442104 catcactagatttt 11442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 21166204 - 21166092
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  21166204 ggtgaggtttagcatgggaaagttacttttttcccaccatgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 21166105  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  21166104 atcactagatttt 21166092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 32473761 - 32473873
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||    
T  32473761 ggtgaggtttagcatgggaaagctacttttttcccactatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttattatactccctc 32473860  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  32473861 atcactagatttt 32473873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 929910 - 930023
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |      
T  929910 aggtgaggtttagcatgggaaatctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaataacacatccttatcatactcccc 930009  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  930010 catcactagatttt 930023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 32474511 - 32474398
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| | |    
T  32474511 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacgaagaacgcatccttaccatactccct 32474412  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  32474411 catcactagatttt 32474398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 481 - 595
Target Start/End: Original strand, 43521075 - 43521186
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||| |     
T  43521075 taggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacc---tacacatccttatcatactccc 43521171  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  43521172 tcatcactagatttt 43521186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 480 - 595
Target Start/End: Complemental strand, 26006829 - 26006714
Alignment:
Q  480 ataggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 578  Q
    |||||||| |||||||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  26006829 ataggtgaagtttagcatgggaaaggctaattttt-cccatcatgagaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactc 26006731  T
Q  579 catcatcactagatttt 595  Q
    | |||||||||||||||    
T  26006730 cctcatcactagatttt 26006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 484 - 595
Target Start/End: Original strand, 50766631 - 50766740
Alignment:
Q  484 gtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatca 583  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||| || |||    
T  50766631 gtgaggtttagcatgggaaagctacttttttcccaccatgg-aaagttaatttttgaccattagatcaaaccaagaacacattcttatcatac-tcctca 50766728  T
Q  584 tcactagatttt 595  Q
    ||||||||||||    
T  50766729 tcactagatttt 50766740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 5113197 - 5113310
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  5113197 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 5113295  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  5113296 tcatcactagatttt 5113310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 498 - 595
Target Start/End: Original strand, 11441664 - 11441761
Alignment:
Q  498 gggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||| || ||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  11441664 gggaaagttacttttttttcaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccctcatcactagatttt 11441761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 20586632 - 20586520
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  20586632 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 20586534  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  20586533 catcactagatttt 20586520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 24394782 - 24394670
Alignment:
Q  483 ggtgaggtttagcaagggaaa-gctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  24394782 ggtgaagtttagcatgggaaatgctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 24394684  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  24394683 catcactagatttt 24394670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 480 - 595
Target Start/End: Complemental strand, 5113759 - 5113644
Alignment:
Q  480 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    |||||||| |||||||| ||||||||  | | ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| |    
T  5113759 ataggtgaagtttagcatgggaaagcctaatctttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaatacatccttaccatactcc 5113660  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  5113659 ctcatcactagatttt 5113644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 36992223 - 36992109
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  36992223 taggtgaagtttagtatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 36992125  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  36992124 ctcatcactagatttt 36992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 37017663 - 37017549
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  37017663 taggtgaagtttagtatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 37017565  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  37017564 ctcatcactagatttt 37017549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 509 - 611
Target Start/End: Complemental strand, 42258083 - 42257982
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagattttcttcttttgtctt 608  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  42258083 ttttttcccatcattggaaagttagtttttgaccattagatcaaatcaataacacat-cttatcatactccctcatcactagattttcttcttttgtctt 42257985  T
Q  609 caa 611  Q
    |||    
T  42257984 caa 42257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 20586072 - 20586184
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||| | |    
T  20586072 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccct 20586170  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  20586171 catcactagatttt 20586184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 510 - 595
Target Start/End: Complemental strand, 45000848 - 45000763
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||    
T  45000848 tttttcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 45000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 24394247 - 24394359
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||| | ||||||| |||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  24394247 ggtgaagtttagtatgggaaagactaattttttcc-accataggaaagttagtttttaaccattagatcaaaccaagaacacatccttagcatactccct 24394345  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  24394346 catcactagatttt 24394359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 26006146 - 26006258
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||| |||||| | |    
T  26006146 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaactaataacacatccttaccatactcctt 26006244  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  26006245 catcactagatttt 26006258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 484 - 595
Target Start/End: Original strand, 45000316 - 45000427
Alignment:
Q  484 gtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||| |||||||| ||||||| ||||||||| ||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||| | ||    
T  45000316 gtgaagtttagcatgggaaaggctaattttt-cccactatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttaccatactccctc 45000414  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  45000415 atcactagatttt 45000427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 43104826 - 43104713
Alignment:
Q  482 aggtgaggtttagcaagggaaa-gctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| |||||| |||||||||| ||||  |||||||||||||||||| ||||||| ||||||| ||||||||||| ||| |||||| |     
T  43104826 aggtgaagtttagcatgggaaatgctaattttt-cccataatgggaaagttagtttttaaccattagatcaaacgaagaacacatctttaccatactccc 43104728  T
Q  581 tcatcactagatttt 595  Q
    |||||| ||||||||    
T  43104727 tcatcattagatttt 43104713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 50836214 - 50836265
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagtta 532  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50836214 taggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtta 50836265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 50839639 - 50839588
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagtta 532  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50839639 taggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtta 50839588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 524
Target Start/End: Complemental strand, 24181987 - 24181950
Alignment:
Q  487 aggtttagcaagggaaagctaattttttcccaccatgg 524  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  24181987 aggtttagcatgggaaagctacttttttcccaccatgg 24181950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 480 - 636
Target Start/End: Complemental strand, 42655791 - 42655635
Alignment:
Q  480 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    |||||| | |||||||| |||||||||| || ||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  42655791 ataggtcacgtttagcatgggaaagctacttctttcccaccatggaaaaattagtttttgaccattagatcaaaccaataacacatccttatcatacttc 42655692  T
Q  580 atcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 636  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42655691 ctcatcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 42655635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 5620917 - 5620805
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  5620917 ggtgaggtttagcatgggaaagttacttttttcccaccatgggaaaattagtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 5620818  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  5620817 atcactagatttt 5620805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 12330712 - 12330598
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  12330712 taggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 12330614  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  12330613 ctcatcactagatttt 12330598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 3595776 - 3595889
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  3595776 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 3595874  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  3595875 tcatcactagatttt 3595889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 8321435 - 8321323
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  8321435 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 8321337  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  8321336 catcactagatttt 8321323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 7858326 - 7858439
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  7858326 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 7858424  T
Q  581 tcatcactagatttt 595  Q
    |||||| ||||||||    
T  7858425 tcatcattagatttt 7858439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 12330148 - 12330260
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  12330148 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttaatttttaaccattagatcaaaccaagaacacatccttaccatactccct 12330246  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  12330247 catcactagatttt 12330260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 502 - 595
Target Start/End: Complemental strand, 16997058 - 16996965
Alignment:
Q  502 aagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| | |||||||||||||||    
T  16997058 aagctacttttttcctaccatgggaaagttagtttttgaccattagatcaaacgaagaacacatccttaccatactccctcatcactagatttt 16996965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 8320875 - 8320987
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||| |||||| | |    
T  8320875 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagattaaaccaataacacatccttaccatactccct 8320973  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  8320974 catcactagatttt 8320987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 24027187 - 24027299
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |    
T  24027187 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatggaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccct 24027285  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  24027286 catcactagatttt 24027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 510 - 595
Target Start/End: Complemental strand, 24027707 - 24027622
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||    
T  24027707 tttttcccatcatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 24027622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 29759597 - 29759709
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |      
T  29759597 ggtgaagtttagcatgggaaagactaattttttcc-actatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcccc 29759695  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  29759696 catcactagatttt 29759709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 484 - 595
Target Start/End: Complemental strand, 3596340 - 3596229
Alignment:
Q  484 gtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||| |||||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||  ||||| | ||    
T  3596340 gtgaagtttagcatgggaaagactaattttt-cccaccatgggaaaattagtttttaaccattagatcaaaccaagaacacatccttactatactccctc 3596242  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  3596241 atcactagatttt 3596229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 7858869 - 7858755
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    ||||||| ||||| || ||||||| | | |||||   ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |     
T  7858869 taggtgaagtttaacatgggaaagattaattttttttaccatgggaaagttagtttttaaccattaaatcaaaccaagaatacatccttaccatactccc 7858770  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  7858769 tcatcactagatttt 7858755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 482 - 547
Target Start/End: Original strand, 31078455 - 31078520
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaa 547  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  31078455 aggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattaa 31078520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 540
Target Start/End: Original strand, 36912245 - 36912302
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttga 540  Q
    ||||| ||||||||| |||||||   |||||||||||||||||||||||| ||||||||    
T  36912245 aggtggggtttagcatgggaaaggctattttttcccaccatgggaaagtt-gtttttga 36912302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 485 - 643
Target Start/End: Original strand, 52532125 - 52532283
Alignment:
Q  485 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 584  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||  | |||||||||||||| |||| |||| ||||| | ||||    
T  52532125 tgaggtttagcatgggaaaactacttttttcccaccatgggaaagtttgtttttgaccagcagatcaaaccaagaacgcatctttattatactccctcat 52532224  T
Q  585 cactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52532225 cactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 52532283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 482 - 643
Target Start/End: Complemental strand, 52532479 - 52532318
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    |||||||||||| || || ||||||| |||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| | ||||| | |    
T  52532479 aggtgaggtttaacatggaaaagctacttttttcccaccgttggaaagttagtttttgaccagtagatcaaaccaagaacacatccttgttatactccct 52532380  T
Q  582 catcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52532379 catcattagattttcttcttttgtcttcaacctcacaaccatcaaccaagatggttattatt 52532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 482 - 643
Target Start/End: Complemental strand, 5259377 - 5259216
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| | |||| ||| ||||||  || |||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||| | |    
T  5259377 aggtgaggtttagcatgagaaaactacttttttttcatcatgggaaagttagttttcgaccattagatcaaatcaagaacacatctttatcatactcctt 5259278  T
Q  582 catcactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  5259277 catcactagattttcttcttttgttttcaacctcacaactatcaaccaagacggttattatt 5259216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 19860330 - 19860442
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| | ||    
T  19860330 ggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatacttaccatactccctc 19860429  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  19860430 atcactagatttt 19860442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 19860921 - 19860808
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |    
T  19860921 aggtgaggtttagcatgggaaacctacttttttcccaccgtgggaaagttagtttttgaccattagatcaaaccaagaacacatccttttcatactccct 19860822  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  19860821 catcactagatttt 19860808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 20174969 - 20175082
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |     
T  20174969 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactccc 20175067  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  20175068 tcatcactagatttt 20175082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 5235373 - 5235486
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||       
T  5235373 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttatcatactcac 5235471  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  5235472 tcatcactagatttt 5235486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 6934551 - 6934438
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  6934551 aggtgaagtttagcatgggaaagactaattttttcc-accatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 6934453  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  6934452 tcatcactagatttt 6934438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 6933820 - 6933933
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  6933820 aggtgaagtttagcatgggaaagactaattttttcc-atcatggaaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 6933918  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  6933919 tcatcactagatttt 6933933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 5235935 - 5235822
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||  ||||||||| || ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |     
T  5235935 aggtgaagtttagcatgggaaaaactaattttt-cctaccataggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccc 5235837  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  5235836 tcatcactagatttt 5235822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 480 - 595
Target Start/End: Complemental strand, 30213966 - 30213851
Alignment:
Q  480 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    |||||||||||||| || |||||| ||| |||||| | ||||||  ||||||||||||||||||||| ||||||||||||| | ||  |||||||||| |    
T  30213966 ataggtgaggtttatcatgggaaaactactttttttctaccatgaaaaagttagtttttgaccattagatcaaaccaagaatatatttttatcatactcc 30213867  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  30213866 ctcatcactagatttt 30213851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 46764279 - 46764319
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccattaaat 549  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46764279 ttttttcccaccatgggaaagttagtttttgaccattaaat 46764319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 11680303 - 11680340
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11680303 ttttttcccaccatgggaaagttagtttttgaccatta 11680340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 11688582 - 11688619
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11688582 ttttttcccaccatgggaaagttagtttttgaccatta 11688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 25655660 - 25655623
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25655660 ttttttcccaccatgggaaagttagtttttgaccatta 25655623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 31910581 - 31910621
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccattaaat 549  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  31910581 ttttttcccaccatgggaaagttagtttttaaccattaaat 31910621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 546
Target Start/End: Complemental strand, 12590229 - 12590187
Alignment:
Q  504 gctaattttttcccaccatgggaaagttagtttttgaccatta 546  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  12590229 gctagtttttttccaccatgggaaagttagtttttgaccatta 12590187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 595
Target Start/End: Complemental strand, 20175421 - 20175361
Alignment:
Q  535 ttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    |||| ||||||| |||||||||| |||||||||||| ||| || | |||||||||||||||    
T  20175421 ttttaaccattagatcaaaccaataacacatccttaccatgctccctcatcactagatttt 20175361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 622
Target Start/End: Original strand, 39412771 - 39412905
Alignment:
Q  489 gtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcac 587  Q
    |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||||  ||||||  |  ||||||  |||||||| || | | | ||     
T  39412771 gtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttaaccattggatcaaatgataaacacactcttatcatgctcctttaacat 39412869  T
Q  588 taga-ttttcttcttttgtcttcaacctcacaacca 622  Q
    |||| |||||| | ||| ||||||||||||||||||    
T  39412870 tagatttttctccatttctcttcaacctcacaacca 39412905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 3167525 - 3167463
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||| ||||||||| ||||||| | | ||||||||||||||||||||||  ||||| ||||||    
T  3167525 ggtggggtttagcatgggaaagattactttttcccaccatgggaaagttgttttttaaccatt 3167463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 3847913 - 3847957
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccattaaatcaaa 553  Q
    ||||||||||||||||||||||   ||||||||||||| ||||||    
T  3847913 ttttttcccaccatgggaaagtatttttttgaccattagatcaaa 3847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 482 - 545
Target Start/End: Complemental strand, 39413670 - 39413607
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||||| |||||| | ||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  39413670 aggtgaagtttagaatgggaaagactaattttt-cccaccataggaaagttagtttttaaccatt 39413607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 485 - 643
Target Start/End: Complemental strand, 42977 - 42820
Alignment:
Q  485 tgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcat 584  Q
    |||||||||||| | |||| ||| |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  42977 tgaggtttagcatgagaaaactacttttttcc-accataaaaaagttagtttttgaccattaaatcaaaccaagaacacatccttataatactccctcat 42879  T
Q  585 cactagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattatt 643  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42878 cactagattttcttcttttgtcttcaacctcacaaccatcaatcaagacggttattatt 42820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 521 - 641
Target Start/End: Original strand, 35211940 - 35212060
Alignment:
Q  521 atgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagattttcttcttttgtcttcaacctcacaac 620  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  35211940 atggaaaagttagtttttgaccattaaatcaaatcaagaacacattcttatcatacttcatcatcattagattttcttcttttgtcttcaacctcacacc 35212039  T
Q  621 catcaaccaagacggttatta 641  Q
    |||||||||||||||||||||    
T  35212040 catcaaccaagacggttatta 35212060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 20559745 - 20559858
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  20559745 aggtgaggtttagcatgggaaagctattttttttccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactccct 20559844  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  20559845 catcactagatttt 20559858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 20560330 - 20560217
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |    
T  20560330 aggtgaggtttagcatgggaaagctatatttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccct 20560231  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  20560230 catcactagatttt 20560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 482 - 600
Target Start/End: Complemental strand, 42901185 - 42901067
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| | |    
T  42901185 aggtgaggtttagcatgaaaaagctatttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacattgttatcatactccct 42901086  T
Q  582 catcactagattttcttct 600  Q
    |||||||||||||||||||    
T  42901085 catcactagattttcttct 42901067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 33139774 - 33139886
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| |||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  33139774 ggtgaggtttagcatgggaaagctactttttttccaccatgagaaagttggtttttgaccattagatcaaaccaagaacacatccttatcatactccctc 33139873  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  33139874 atcactagatttt 33139886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 33140342 - 33140230
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||    
T  33140342 ggtgaggtttagtatgggaaagttacttttttcccaccatgggaaagttagtttttgaccattagatcaaactaagaacacatccttatcatactccctc 33140243  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  33140242 atcactagatttt 33140230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 4179637 - 4179749
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| | |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||    
T  4179637 ggtgaggtttagcatgagaaaactatttttttcccaccatgggaaagttagtatttgaccattagatcaaaccaagaacacatccttaccatactccctc 4179736  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  4179737 atcactagatttt 4179749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 4180387 - 4180274
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    |||||||||||| || || |||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| | |    
T  4180387 aggtgaggtttaacatggaaaagctacatttttcccaccatgggaaagttagtttttgaccattagatcaaactaagaacacatccttaccatactccct 4180288  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  4180287 catcactagatttt 4180274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 483 - 603
Target Start/End: Original strand, 42900647 - 42900767
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| || |||| || ||||||  |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||   ||    
T  42900647 ggtgaggtttagcatggaaaaggtacttttttttcaccatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactcgttc 42900746  T
Q  583 atcactagattttcttctttt 603  Q
    ||||||| |||||||||||||    
T  42900747 atcactaaattttcttctttt 42900767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 481 - 595
Target Start/End: Original strand, 30414179 - 30414293
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  30414179 taggtgaagtttagtatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 30414277  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  30414278 ctcatcactagatttt 30414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 40641218 - 40641106
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| ||||||| || ||||||   || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |     
T  40641218 ggtgaggtttagcatgggaaagttactttttttttactatgggaaagttagtttttgaccattagatcaaatcaagaacacatccttatcatactccctt 40641119  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  40641118 atcactagatttt 40641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 595
Target Start/End: Original strand, 25137410 - 25137524
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||||| |    
T  25137410 taggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaatcaataacacatccttaccatactcc 25137508  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  25137509 ctcatcactagatttt 25137524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 40640653 - 40640762
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| ||||||  || |||||||||||   |||||||||||||||| | ||||||||||||||||||||||||| ||||||| || | ||    
T  40640653 ggtgaggtttagcatgggaaaattacttttttcccac---gggaaagttagtttttaatcattaaatcaaaccaagaacacatcattatcattctccctc 40640749  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  40640750 atcactagatttt 40640762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 25137973 - 25137860
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaa-ccaagaacacatccttatcatacttca 580  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |||||| | ||||||||||||||| |||||| |     
T  25137973 ggtgaagtttagcatgggaaagactaattttt-cccaccatgggaaaattagtttttaaccattagatcaaatcaaagaacacatccttaccatactccc 25137875  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  25137874 tcatcactagatttt 25137860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 544
Target Start/End: Original strand, 33686926 - 33686987
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccat 544  Q
    ||||| |||||||| ||||||| | | ||||||||||||||||||||||||||||| |||||    
T  33686926 ggtgaagtttagcatgggaaaggttaatttttcccaccatgggaaagttagtttttaaccat 33686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 29006374 - 29006411
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29006374 ttttttcccaccatgggaaagttagtttttaaccatta 29006411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 29007220 - 29007183
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29007220 ttttttcccaccatgggaaagttagtttttaaccatta 29007183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 545
Target Start/End: Complemental strand, 41224865 - 41224828
Alignment:
Q  508 attttttcccaccatgggaaagttagtttttgaccatt 545  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41224865 attttttcccaccatgggaaagttagtttttaaccatt 41224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 545
Target Start/End: Complemental strand, 33687798 - 33687735
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||| ||||||    
T  33687798 aggtgaagtttagcatgggaaaggctaattttttcc-accatgagaaagttagtttttaaccatt 33687735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 553
Target Start/End: Original strand, 42607078 - 42607151
Alignment:
Q  480 ataggtgaggtttagcaagggaaagct-aattttttcccaccatgggaaagttagtttttgaccattaaatcaaa 553  Q
    ||||||| ||||||||| |||||||   |||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  42607078 ataggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagtt-gtttttgtccattagatcaaa 42607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 543
Target Start/End: Complemental strand, 35613264 - 35613231
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgacca 543  Q
    ||||||||||||||| ||||||||||||||||||    
T  35613264 tttttcccaccatggaaaagttagtttttgacca 35613231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 44896073 - 44896110
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  44896073 tttttccccaccatgggaaagttagtttttaaccatta 44896110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 545
Target Start/End: Original strand, 29314608 - 29314644
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29314608 tttttttccaccatgggaaagttagtttttaaccatt 29314644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 480 - 595
Target Start/End: Complemental strand, 28983343 - 28983228
Alignment:
Q  480 ataggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  28983343 ataggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactcc 28983244  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  28983243 ctcatcactagatttt 28983228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 34717805 - 34717691
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |     
T  34717805 taggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactccc 34717706  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  34717705 tcatcactagatttt 34717691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 489 - 618
Target Start/End: Complemental strand, 28535506 - 28535376
Alignment:
Q  489 gtttagcaagggaaagctaattttttc-ccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcac 587  Q
    |||||||| |||||||||| ||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||     
T  28535506 gtttagcatgggaaagctacttttttttccaccataggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatacttcctcatcat 28535407  T
Q  588 tagattttcttcttttgtcttcaacctcaca 618  Q
    || ||||||||||||||||||||||||||||    
T  28535406 tatattttcttcttttgtcttcaacctcaca 28535376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 19062871 - 19062759
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||    
T  19062871 ggtgagctttagcatgggaaagctacttttttcccaccatgagaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctc 19062772  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  19062771 atcactagatttt 19062759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 34717241 - 34717354
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||   |    
T  34717241 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagttagtttttgatcattagatcaaatcaagaacacgtccttatcatactctct 34717340  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  34717341 catcactagatttt 34717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 7635685 - 7635571
Alignment:
Q  481 taggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttc 579  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |    
T  7635685 taggtgaagtttagcatgggaaagactaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactcc 7635587  T
Q  580 atcatcactagatttt 595  Q
     |||||||||||||||    
T  7635586 ctcatcactagatttt 7635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 28982782 - 28982893
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||| ||| |||||||  | ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||    
T  28982782 ggtgaggtttagcatgggaaaactacttttttct-atcatgggaaagttagtttttgaccattcgatcaaaccaagaacacatccttatcatactccctc 28982880  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  28982881 atcactagatttt 28982893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 7635123 - 7635236
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  7635123 aggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 7635221  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  7635222 tcatcactagatttt 7635236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 18290543 - 18290431
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||| | |    
T  18290543 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaaccaagaacaaatccttaccatactccct 18290445  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  18290444 catcactagatttt 18290431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 18290214 - 18290327
Alignment:
Q  482 aggtgaggtttagcaagggaaa-gctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| |||||| ||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||| |     
T  18290214 aggtgaagtttagcatgggaaaagctaatttt-tcccaccatgggaaagttaatttttaaccattagatcaaaccaagaacaaatccttaccatactccc 18290312  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  18290313 tcatcactagatttt 18290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 551
Target Start/End: Complemental strand, 2925021 - 2924952
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatca 551  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  2925021 aggtgaggtttagcatgggaaagctacttttttcccaccataggaaagttagtttttgaccattagatca 2924952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 4348846 - 4348959
Alignment:
Q  482 aggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    |||||| |||||||| | ||||| | | ||||| |||||||  ||||||| |||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  4348846 aggtgaagtttagcatgagaaagattaattttttccaccataagaaagtttgtttttaaccattagatcaaaccaagaacacatccttaccatactccct 4348945  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  4348946 catcactagatttt 4348959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 510 - 595
Target Start/End: Complemental strand, 12999498 - 12999413
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    |||||||||||||| | |||||||||||| ||||||| ||||||||||||||| ||||||| |||||| | ||| || ||||||||    
T  12999498 tttttcccaccatgagcaagttagtttttaaccattagatcaaaccaagaacatatccttaccatactccctcaccattagatttt 12999413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 10608341 - 10608304
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10608341 ttttttcccaccatgggaaagttagtttttgaccatta 10608304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 528
Target Start/End: Original strand, 14496445 - 14496489
Alignment:
Q  484 gtgaggtttagcaagggaaagctaattttttcccaccatgggaaa 528  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  14496445 gtgaggtttagcatgggaaagctacttttttctcaccatgggaaa 14496489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 622
Target Start/End: Complemental strand, 18605901 - 18605767
Alignment:
Q  489 gtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcac 587  Q
    |||||||| ||||||| |||||||||||| |||||||||||||| |||||| ||||||  ||||||  |  ||||||  |||||||| || | | | ||     
T  18605901 gtttagcatgggaaaggctaattttttcc-accatgggaaagtttgtttttaaccattggatcaaatgataaacacactcttatcatgctcctttaacat 18605803  T
Q  588 taga-ttttcttcttttgtcttcaacctcacaacca 622  Q
    |||| |||||| | ||| ||||||||||||||||||    
T  18605802 tagatttttctccatttctcttcaacctcacaacca 18605767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 930950 - 930988
Alignment:
Q  509 ttttttcccaccatgggaaa-gttagtttttgaccatta 546  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  930950 ttttttcccaccatgggaaaagttagtttttgaccatta 930988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 3705337 - 3705449
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||    
T  3705337 ggtgaggtttagcataggaaagctacttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccatatcatactccctc 3705436  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  3705437 atcactagatttt 3705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 16681566 - 16681678
Alignment:
Q  483 ggtgaggtttagcaagggaaagctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||||||||||||| |||||||||| || ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||    
T  16681566 ggtgaggtttagcatgggaaagctagttatttcccatcatgggaaagttagtttttggccattagatcaaaccaagaacacatccttatcatactccctc 16681665  T
Q  583 atcactagatttt 595  Q
    |||||||||||||    
T  16681666 atcactagatttt 16681678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 481 - 595
Target Start/End: Complemental strand, 3705876 - 3705760
Alignment:
Q  481 taggtgaggtttagcaagggaaagctaattttttc--ccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 578  Q
    |||||||||||||||| |||||  ||| ||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  3705876 taggtgaggtttagcatgggaagactactttttttttccaccatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttatcatactc 3705777  T
Q  579 catcatcactagatttt 595  Q
    | |||||||||||||||    
T  3705776 cttcatcactagatttt 3705760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 30899390 - 30899502
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  30899390 ggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 30899488  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  30899489 catcactagatttt 30899502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 15562089 - 15561976
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||| |     
T  15562089 aggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccc 15561991  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  15561990 tcatcactagatttt 15561976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 16903946 - 16903833
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  16903946 aggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 16903848  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  16903847 tcatcactagatttt 16903833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 595
Target Start/End: Complemental strand, 16992441 - 16992327
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| ||||||||| | |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  16992441 aggtgaagtttagcatgggaaaggctaatttttcctcaccatgggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 16992342  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  16992341 tcatcactagatttt 16992327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 6610091 - 6609979
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||| | |    
T  6610091 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgggaaagttagtttttaaccattagattaaaccaagaacacatccttaccatactccct 6609993  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  6609992 catcactagatttt 6609979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 7994621 - 7994509
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |    
T  7994621 ggtgaagtttagcatgggaaaggctaattttttcc-accatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccct 7994523  T
Q  582 catcactagatttt 595  Q
    |||| |||||||||    
T  7994522 catcgctagatttt 7994509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 15561540 - 15561653
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| |||||||| ||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| |     
T  15561540 aggtgaagtttagcatgggaaagactaatttt-tcccaccattggaaagttagtttttaaccattagatcaaactaagaacacatccttaccatactccc 15561638  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  15561639 tcatcactagatttt 15561653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 510 - 595
Target Start/End: Original strand, 7994082 - 7994167
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||    
T  7994082 tttttcccatcatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactccctcatcactagatttt 7994167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 482 - 577
Target Start/End: Complemental strand, 37996632 - 37996537
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatact 577  Q
    |||||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  37996632 aggtgaagtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttaaccattagatcaaatcaagaacacatccttatcatact 37996537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 510 - 595
Target Start/End: Original strand, 16903425 - 16903509
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||| |||||| | |||||||||||||||    
T  16903425 tttttcccaccatggaaaagttagtttttaaccattagatcaaa-caagaacacatccttaccatactccctcatcactagatttt 16903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 30899949 - 30899837
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||  ||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |    
T  30899949 ggtgaagtttagcatgggaaaggctaattttt-cccaccatgaaaaagttagtttttaactattagatcaaaccaagaacacatccttaccatactccct 30899851  T
Q  582 catcactagatttt 595  Q
    ||||| ||||||||    
T  30899850 catcattagatttt 30899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 484 - 595
Target Start/End: Original strand, 6609552 - 6609663
Alignment:
Q  484 gtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatc 582  Q
    |||| |||||||| ||||||| |||||||| ||||||||||| ||||||||||||| ||||||| || ||||||| |||||||||||| |||||| | ||    
T  6609552 gtgaagtttagcatgggaaaggctaatttt-tcccaccatggaaaagttagtttttaaccattagatgaaaccaacaacacatccttaccatactccctc 6609650  T
Q  583 atcactagatttt 595  Q
     ||||||||||||    
T  6609651 ttcactagatttt 6609663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 566
Target Start/End: Complemental strand, 16682288 - 16682231
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatc 566  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||    
T  16682288 ttttttcccacattggcaaagttagtttttgactattaaatcaaacgaagaacacatc 16682231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 546
Target Start/End: Original strand, 34617652 - 34617716
Alignment:
Q  482 aggtgaggtttagcaagggaaagc-taattttttcccaccatgggaaagttagtttttgaccatta 546  Q
    ||||| ||||||||| |||||||  ||||| ||||||||||||||||||||| |||||||||||||    
T  34617652 aggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagtta-tttttgaccatta 34617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 545
Target Start/End: Original strand, 40992249 - 40992285
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  40992249 ttttttcctaccatgggaaagttagtttttaaccatt 40992285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 480 - 595
Target Start/End: Original strand, 4130 - 4245
Alignment:
Q  480 ataggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatactt 578  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||     
T  4130 ataggtgaagtttagcatgggaaaggctaatttt-tcccaccatgggaaagttagtttttaaccattagatcaaaccaagaacacatccttaccatactc 4228  T
Q  579 catcatcactagatttt 595  Q
    | |||||||||||||||    
T  4229 cctcatcactagatttt 4245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 595
Target Start/End: Complemental strand, 4672 - 4560
Alignment:
Q  483 ggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcat 581  Q
    ||||| |||||||| ||||||| |||||||||||| | ||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |    
T  4672 ggtgaagtttagcatgggaaagactaattttttcc-atcatgggaaagttagtttttaacaattagatcaaaccaagaacacatccttaccatactccct 4574  T
Q  582 catcactagatttt 595  Q
    ||||||||||||||    
T  4573 catcactagatttt 4560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 61573 - 61686
Alignment:
Q  482 aggtgaggtttagcaagggaaag-ctaattttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttca 580  Q
    |||||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |     
T  61573 aggtgaagtttagcatgggaaaggctaattttt-cccatcatgggaaagttagtttttgaccattagatcaaaccaagaacacatccttctcatactccc 61671  T
Q  581 tcatcactagatttt 595  Q
    |||||||||||||||    
T  61672 tcatcactagatttt 61686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 595
Target Start/End: Complemental strand, 62089 - 62023
Alignment:
Q  529 gttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    |||||||||| | ||||| |||||||||||| |||||||||| |||||| | |||||||||||||||    
T  62089 gttagttttttagcattagatcaaaccaagatcacatccttaccatactccctcatcactagatttt 62023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 510 - 595
Target Start/End: Complemental strand, 202304 - 202219
Alignment:
Q  510 tttttcccaccatgggaaagttagtttttgaccattaaatcaaaccaagaacacatccttatcatacttcatcatcactagatttt 595  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  202304 tttttcccaccatggaaaagttagtttttaaccattaaatcaaaccaagaacacatccttaccatactccctcatcactagatttt 202219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 554
Target Start/End: Complemental strand, 22278 - 22203
Alignment:
Q  480 ataggtgaggtttagcaagggaaagctaattttttc-ccaccatgggaaagttagtttttgaccattaaatcaaac 554  Q
    |||||||  |||||||| |||||||||| ||||||  ||||||||||||| || |||||||||||||| |||||||    
T  22278 ataggtggcgtttagcatgggaaagctacttttttttccaccatgggaaaatttgtttttgaccattagatcaaac 22203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 545
Target Start/End: Original strand, 17366 - 17402
Alignment:
Q  509 ttttttcccaccatgggaaagttagtttttgaccatt 545  Q
    |||||||||||||||||||||||||||||| ||||||    
T  17366 ttttttcccaccatgggaaagttagtttttaaccatt 17402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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