View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_4 (Length: 568)
Name: NF3719_low_4
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 52 - 556
Target Start/End: Complemental strand, 47037627 - 47037117
Alignment:
| Q |
52 |
aacactactcttagaaccaaacactaggtccaactcaatagaccatcaacgcctataaaaaggcactgttagccatcaaaaggtactaacaatataaagt |
151 |
Q |
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| T |
47037627 |
aacactactcttagacccaaacactaggtccaagtcaatagaccatcaacacctataaaaaggcactgttagccatcaaaaggtaattacaatataaagt |
47037528 |
T |
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| Q |
152 |
ttaacctctcactct-----cttttattagcttgagcgtaaaagtgtgtgcaaatactcacaactcgcatattgacggtcattgctccaattcgcgttga |
246 |
Q |
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| T |
47037527 |
ttaacctctcactctttgctcttttactagcttgagcgtaaaagtgtctgcaaatactcacaactcgcatattgacggttattgctccaattcgcattga |
47037428 |
T |
|
| Q |
247 |
ggtagttgttgcttgacaaacaaaatcattctaatcactctatagcaatatgnnnnnnngaagacacttgcgttttttgtgaactatgttatcttgatga |
346 |
Q |
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| T |
47037427 |
ggcggttgttgcttgacaaacaaaatcattctaatcactctatatcaatatgttttttttaagacacttgcgttttttgtgaactatattatcttgatga |
47037328 |
T |
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| Q |
347 |
tgattgatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaacggcagtggccc |
446 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037327 |
tgatagatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaacggcagtggccc |
47037228 |
T |
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| Q |
447 |
aacaaagcggcattagtttgaaacgtac-nnnnnnnnttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaaaagaggcagttg |
545 |
Q |
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| T |
47037227 |
aacaaagcggcattagtttgaaacgtacaaaaaaaatttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaaaagaggcagttg |
47037128 |
T |
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| Q |
546 |
ttgatatgtag |
556 |
Q |
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||||||||||| |
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| T |
47037127 |
ttgatatgtag |
47037117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 47037685 - 47037650
Alignment:
| Q |
17 |
aggttcaatcccgcgaagtccaaatacagataaaga |
52 |
Q |
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| T |
47037685 |
aggttcaatcccgcgaagtccaaatacagataaaga |
47037650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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