View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3719_low_5 (Length: 545)
Name: NF3719_low_5
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_5 |
 | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 33976819 - 33976514
Alignment:
| Q |
14 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtat--gaacct |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| ||| | |||||| |
|
|
| T |
33976819 |
agaccatgcttggcaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaaaggaacct |
33976721 |
T |
|
| Q |
112 |
aaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagttaaaatta |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33976720 |
aaggactacgaaaagctttttagaactggagaagcata----------ctaccaccttattatcatgtaaataaatcattagaatgagtagttaaaatta |
33976631 |
T |
|
| Q |
212 |
aaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatac-aaagaaattacaaaatattacaaaagaattttaattatatactgtaca |
310 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
33976630 |
aaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctataca |
33976531 |
T |
|
| Q |
311 |
aaagtcattcaaagaag |
327 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33976530 |
aaagtcattcaaagaag |
33976514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 33954216 - 33953913
Alignment:
| Q |
14 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| || |
|
|
| T |
33954216 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcagaaaca--gg-------------gaaccaaa |
33954132 |
T |
|
| Q |
114 |
ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagtt---aaaatt |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | | |||||| |
|
|
| T |
33954131 |
ggactacaaaaagctttttagagttggagaagcatagaaggatttactaccaccttattagaatgtaaataaatcaatagaatgagctgataaaaaaatt |
33954032 |
T |
|
| Q |
211 |
aaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatac--aaagaaattacaaaatattacaaaagaattttaattatatactgta |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
33954031 |
aaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctata |
33953932 |
T |
|
| Q |
309 |
caaaagtcattcaaagaag |
327 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33953931 |
caaaagtcattcaaagaag |
33953913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 33961522 - 33961219
Alignment:
| Q |
14 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa |
113 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| ||| | |||||||| |
|
|
| T |
33961522 |
agaccatgcttggaaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaggaacctaa |
33961424 |
T |
|
| Q |
114 |
ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagttaaaattaaa |
213 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33961423 |
ggactacgaaaaactttttagaactggagaagcata----------ctaccagcttattatcttgtaaataaatcattagaatgagtagttaaaattaaa |
33961334 |
T |
|
| Q |
214 |
aattgaatttattgatcgagaatagctaatacaaatcatgtatttatac-aaagaaattacaaaatattacaaaagaattttaattatatactgtacaaa |
312 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
33961333 |
aattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctatacaaa |
33961234 |
T |
|
| Q |
313 |
agtcattcaaagaag |
327 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33961233 |
agtcattcaaagaag |
33961219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 350 - 527
Target Start/End: Complemental strand, 33953916 - 33953739
Alignment:
| Q |
350 |
gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33953916 |
gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
33953817 |
T |
|
| Q |
450 |
gtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
527 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
33953816 |
ggttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagatt |
33953739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 350 - 527
Target Start/End: Complemental strand, 33961222 - 33961045
Alignment:
| Q |
350 |
gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33961222 |
gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctgaaaatcttcccatgtagcagccgtctcttcatcgca |
33961123 |
T |
|
| Q |
450 |
gtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
527 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33961122 |
ggttatcgtcttcaaattctgaagattgaaaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
33961045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 350 - 527
Target Start/End: Complemental strand, 33993436 - 33993259
Alignment:
| Q |
350 |
gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993436 |
gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
33993337 |
T |
|
| Q |
450 |
gtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
527 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
33993336 |
ggttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagatt |
33993259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 350 - 527
Target Start/End: Complemental strand, 33976517 - 33976340
Alignment:
| Q |
350 |
gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33976517 |
gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgtgaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
33976418 |
T |
|
| Q |
450 |
gtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
527 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
33976417 |
ggttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaagttgccatgtccagatt |
33976340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 33993557 - 33993433
Alignment:
| Q |
205 |
aaaattaaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatacaaa--gaaattacaaaatattacaaaagaattttaattatat |
302 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993557 |
aaaattaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatat |
33993458 |
T |
|
| Q |
303 |
actgtacaaaagtcattcaaagaag |
327 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
33993457 |
gctatacaaaagtcattcaaagaag |
33993433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 422
Target Start/End: Complemental strand, 33983569 - 33983454
Alignment:
| Q |
307 |
tacaaaagtcattcaaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagca |
406 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| | ||| | ||||||||| ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
33983569 |
tacagaagtcattcaaagaagaggtcttatgagatcatttactaaagttagtttaagttagcatcaacctgaggaacctctatcttcatattaggaagca |
33983470 |
T |
|
| Q |
407 |
tatgctggaaatcttc |
422 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
33983469 |
taagctggaaatcttc |
33983454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 33983937 - 33983680
Alignment:
| Q |
14 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa |
113 |
Q |
| |
|
|||||||| ||||||| ||| ||||||| || ||| ||||| | ||||||||||||||||||||||| ||| | |||| |||||| || ||||||| |
|
|
| T |
33983937 |
agaccatgtttgacaagtttggaggatcgacaactttttgccaaatttgatctatgattgaagaactcaaaaatag-ggaaaaagaaaatagaaacctaa |
33983839 |
T |
|
| Q |
114 |
ggactacgaaaa-gcttttta-gagttggagaagcata--gaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagtt----- |
204 |
Q |
| |
|
| |||| |||| |||||||| ||||||||||| |||| ||||| ||||||| | ||||||||||||||| ||||| |||||||||| | | |
|
|
| T |
33983838 |
gtactaaaaaaaagctttttaagagttggagaaccatatagaaggatttactagct--ttattatcatgtaaaaaaatctatagaatgagaaaattaaaa |
33983741 |
T |
|
| Q |
205 |
aaaattaaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatacaaa |
265 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33983740 |
aaaaaaaaaaattgaatttattgattgagaatagctaatacaaatcatgtagttatacaaa |
33983680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 349 - 527
Target Start/End: Complemental strand, 33914736 - 33914561
Alignment:
| Q |
349 |
tgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgc |
448 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||| | | ||||| || |||| |||||| |||||||| |||||||||||||||||| | |
|
|
| T |
33914736 |
tgaagccaatttaagttgacttcaacttgaggaacctctatagtgagattggaaatcatagattggaaagattcccatgaagcagccgtctcttcatcac |
33914637 |
T |
|
| Q |
449 |
agtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
527 |
Q |
| |
|
| |||| ||| |||||| ||||||||||||||| |||||||||||| || || |||||| | |||||| ||||| |
|
|
| T |
33914636 |
a---tatcacctttaaattcgcaagattgacaactgaaaatggcaattcacaacttgtacaactagacatgtatagatt |
33914561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 512
Target Start/End: Complemental strand, 33943453 - 33943293
Alignment:
| Q |
349 |
tgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgc |
448 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||| | | ||||| || |||| |||||| |||||||| |||||| |||| |||||| | |
|
|
| T |
33943453 |
tgaagccagtttaaattgacttcaacatgaggaacttctatagttaaattggaaatcatagattggaaagattcccatgaagcagctgtcttttcatcac |
33943354 |
T |
|
| Q |
449 |
agtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaact |
512 |
Q |
| |
|
| | || ||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
33943353 |
a---tgtcacctttaaattctgaagattgacaacggagaatggcaattcacaacttgcacaact |
33943293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 320 - 527
Target Start/End: Complemental strand, 13510 - 13303
Alignment:
| Q |
320 |
caaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatc |
419 |
Q |
| |
|
|||| |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
13510 |
caaataagaggtcttgggagatcatttactgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcataggctgaaaatc |
13411 |
T |
|
| Q |
420 |
ttcccatgtagcagccgtctcttcatcgcagtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatg |
519 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13410 |
ttcccatgaggcagctgtctcttcatcgcaagttatcgtcttcaagttctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatg |
13311 |
T |
|
| Q |
520 |
tacagatt |
527 |
Q |
| |
|
|||||||| |
|
|
| T |
13310 |
tacagatt |
13303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 307 - 527
Target Start/End: Original strand, 8275468 - 8275688
Alignment:
| Q |
307 |
tacaaaagtcattcaaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagca |
406 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8275468 |
tacaaaatccattcaaagaagcggtcgtagcagatcctttaatgatggcaatttaagttaacatcaacatgaggaacctctatcttcatactaggaagcg |
8275567 |
T |
|
| Q |
407 |
tatgctggaaatcttcccatgtagcagccgtctcttcatcgcagtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgc |
506 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||| | ||||||| ||| |
|
|
| T |
8275568 |
tatgatggaaatcttcccatgtagcagccgtctcttcatcgcaggttttcgtcttcaaattctgaagattgacatctgaaaatggaagctcaatacttgc |
8275667 |
T |
|
| Q |
507 |
acaacttgccatgtacagatt |
527 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
8275668 |
acaacttgccatgtatagatt |
8275688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 137 - 305
Target Start/End: Original strand, 8275222 - 8275392
Alignment:
| Q |
137 |
ttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtag-ttaaaattaaaaattgaatttattgatcgagaa |
235 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||| ||| ||||||| |||| |
|
|
| T |
8275222 |
ttggagaagcataggaggatttactagcaccttattatcatgtaaacaaatctatagaatgagtagataaaaattaaaaatttaatctattgattaagaa |
8275321 |
T |
|
| Q |
236 |
tagctaatacaaatcatgtatttatac-aaagaaattacaaaatattacaaaagaattttaattatatact |
305 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
8275322 |
tagctaatacaaatcatgcatttatacaaaagaatttacaaaagattacaaaagaattttagttatatact |
8275392 |
T |
|
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