View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_6 (Length: 508)
Name: NF3719_low_6
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 111 - 496
Target Start/End: Original strand, 24244856 - 24245241
Alignment:
| Q |
111 |
caaatgtgcacaattcaccaaacctttgattgtgtctccatctgatacataattttaaatgttcctaggagatgacttttctgaatggtttatttgtttt |
210 |
Q |
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| T |
24244856 |
caaatgtgcacaattcaccaaacctttgattgtgtctccatctgatacataattttaaatgttcctaggagatgacttttctgaatggtttatttgtttt |
24244955 |
T |
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| Q |
211 |
tataggcatgaagcaaatggaacacgagaaagcgcctatctcagatgcaagatcaatagaggaaactggaatacctatgacaacattgtcattatcctcg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
24244956 |
tataggcatgaagcaaatggaacacgagaaagcgcctatctcagatgcaagatcaatagaggaaactggaatacctatgacaacattgtcactttcctcg |
24245055 |
T |
|
| Q |
311 |
cgcaaaaattctgtttgtcgtttttcttcgaaggaaaagagtgttggagcgtcgaatgagtccgcgaagaaactttctttactaatagttttctatgcta |
410 |
Q |
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| T |
24245056 |
cgcaaaaattctgtttgtcgtttttcttcgaaggaaaagagtgttggagcgtcgaatgagtccgcgaagaaactttctttactaatagttttctatgcta |
24245155 |
T |
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| Q |
411 |
ttgttatgattgttgaatttgttgggggtttgaaagctcacagcttatctgttatcagtgatgctgcacatttgctttctgatatt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24245156 |
ttgttatgattgttgaatttgttgggggtttgaaagctcacagcttatctgttattagtgatgctgcacatttgctttctgatatt |
24245241 |
T |
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