View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_8 (Length: 460)
Name: NF3719_low_8
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 29592791 - 29592329
Alignment:
| Q |
1 |
atttcattttaattgcaatattcaacaaagatctacattggtaaaggtggtttcactttgttgattatactttcgcgactgtccaatgtgatagagtctc |
100 |
Q |
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| T |
29592791 |
atttcattttaattacaatattcaacaaagatctacattggtaaaggtggtttcactttgttgattatactttcgcgactgtccaatgtgatagagtctc |
29592692 |
T |
|
| Q |
101 |
ctctcctctcctct-----gggcacatatagcattcagtatcggcgattcacacaatcaatggctgatttcactcccagttcttctaattgcacccccac |
195 |
Q |
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| T |
29592691 |
ctctcctctcctctcctctgggcacatatagcattcagtatcggcgattcacacaatcaatggctgatttcactcccaattcttctaattgcacccccac |
29592592 |
T |
|
| Q |
196 |
aacttcttcttc---------------ttcttgcttccaacgaacggttacattatacgattggtggctcgttaaatcatctcaaggaaacaaccactgt |
280 |
Q |
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| T |
29592591 |
aacttcttcttcttctacttcttcttcttcttgcttccaacgaacggttacattgtacgattggtggctcgttaaatcatcccaaggaaacaaccaccgt |
29592492 |
T |
|
| Q |
281 |
ttagccatctccggcatctcttccacaaagtaagtattcttttcagatacccttgacgttatgcttaattcaattcacccacaatattatgcttattaca |
380 |
Q |
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| T |
29592491 |
ttagccatctccggcatctcttccacaaagtaagtattcttttcagatacccttgacgttatgcttaatt-----------caatattatgcttattaca |
29592403 |
T |
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| Q |
381 |
catttaatgttgtgtttcagggaagaagccgttcgggtgtttaattccgctcctattatcaaaagatatgatga |
454 |
Q |
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| T |
29592402 |
catttaatgttgtgattcagggaagaagccgttcgggtgtttaattccgctcctattatcaaaagatatgatga |
29592329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 29585231 - 29585143
Alignment:
| Q |
226 |
ggttacattatacgattggtggctcgttaaatcatctcaaggaaacaaccactgtttagccatctccggcatctcttccacaaagtaag |
314 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| |||||||| |
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| T |
29585231 |
ggttactttatacgattggtggctcgttaaatcatcccaaggaaacaaccaccgtttagccatctctggcatctcatccagaaagtaag |
29585143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 29584162 - 29584087
Alignment:
| Q |
378 |
acacatttaatgttgtgtttcagggaagaagccgttcgggtgtttaattccgctcctattatcaaaagatatgatg |
453 |
Q |
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| T |
29584162 |
acacacttaatgttgtgattcagggaagaagcagttcagttttttgtttccgctcctattatcaaaagatatgatg |
29584087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 11563441 - 11563403
Alignment:
| Q |
14 |
tgcaatattcaacaaagatctacattggtaaaggtggtt |
52 |
Q |
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| T |
11563441 |
tgcaatattcaacaaagattgacattggtaaaggtggtt |
11563403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 24020501 - 24020466
Alignment:
| Q |
14 |
tgcaatattcaacaaagatctacattggtaaaggtg |
49 |
Q |
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| T |
24020501 |
tgcaatattcaacaaagatcaacattggtaaaggtg |
24020466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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