View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3719_low_9 (Length: 452)
Name: NF3719_low_9
Description: NF3719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3719_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 40 - 436
Target Start/End: Original strand, 30515578 - 30515969
Alignment:
| Q |
40 |
ggaagaaaagaagaacttacacgataaatatgaaaaatgtaatgtgcctcctcgatcttcttaggtccattcttatgcatgcataaaattttagccaatc |
139 |
Q |
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| T |
30515578 |
ggaagaaaagaagaacttacacgataaatatgaaaaatgtaatgtgcctcctcgatcttcttaggtccattcttatgcatgcataaaattttagccaatc |
30515677 |
T |
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| Q |
140 |
tcgttgtactacaagtaagcattgcaggatgaatgaaatgaaaaaggtacattaatttatttattttaatctataggctttttatgtcacttgnnnnnnn |
239 |
Q |
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| T |
30515678 |
tcgttgtactacaagtaagcattgcaggatgaatgaaatgaaaaaggtacattaatttatttattttaatctataggctttttatgtcacttg-aaaaaa |
30515776 |
T |
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| Q |
240 |
nnttgtcttttcctttaattaagcccagtttgagaaagacaacgagatgaaagtatgcaataatggagttcccagacttgtcctttgctttgcccccact |
339 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30515777 |
aattgtct-----tttaattaagcccagtttgagaaagacaacgagatgaaagtatgcaataatggagttcccaaacttgtcctttgctttgcccccact |
30515871 |
T |
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| Q |
340 |
actccacaatcacattcctttat-nnnnnnnttaaaataaagacaccattttttaaaagggatcagctttcagcattcaaaagaatatgcatggatct |
436 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30515872 |
actccacaatcacattcctttataaaaaaaattaaaataaagacaccattttttaaaagggatcagctttcagcattcaaaagaatatgcatggatct |
30515969 |
T |
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