View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3720_high_1 (Length: 638)
Name: NF3720_high_1
Description: NF3720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3720_high_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 6915860 - 6916493
Alignment:
| Q |
1 |
aaacaatcatttctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttggaaagccccgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915860 |
aaacaatcatttctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggt |
6915959 |
T |
|
| Q |
101 |
aaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaaggacaatatggacgagtgattggatatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6915960 |
aaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggagggcaaggacaatatggacgagtgattggatatatt |
6916059 |
T |
|
| Q |
201 |
gaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916060 |
gaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggtt |
6916159 |
T |
|
| Q |
301 |
ttaaagaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916160 |
ttaaagaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtga |
6916259 |
T |
|
| Q |
401 |
acttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6916260 |
acttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgc----tgaactgaaagta |
6916355 |
T |
|
| Q |
501 |
ccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||| |
|
|
| T |
6916356 |
ccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctc |
6916455 |
T |
|
| Q |
601 |
atgtccctcttaacaatatgtttgggtattctacggct |
638 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6916456 |
atgtgcctcttaacaatatgtttgggtattctacggct |
6916493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
71 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
|
| Q |
171 |
ggacaatatggacgagtgattgg |
193 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
195 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
294 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
|
| Q |
295 |
aaggttttaaagaagctgccaactc |
319 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 325 - 437
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
325 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
424 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
|
| Q |
425 |
ctatgcttttaga |
437 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 439 - 542
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
439 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
538 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
|
| Q |
539 |
caag |
542 |
Q |
| |
|
|||| |
|
|
| T |
15037828 |
caag |
15037825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 604
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
542 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
604 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
|
|
| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 15039977 - 15039923
Alignment:
| Q |
3 |
acaatcatttctggaatgggagaactacacttagatatttatgttaaatgcatta |
57 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||| || |||||| |
|
|
| T |
15039977 |
acaattatttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University