View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3720_high_2 (Length: 438)
Name: NF3720_high_2
Description: NF3720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3720_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 6915883 - 6915476
Alignment:
| Q |
23 |
ctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaattt |
122 |
Q |
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| T |
6915883 |
ctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaaattt |
6915784 |
T |
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| Q |
123 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915783 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
6915684 |
T |
|
| Q |
223 |
gtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaactaagc |
322 |
Q |
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| T |
6915683 |
gtatcgctggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaactaagc |
6915584 |
T |
|
| Q |
323 |
gaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaactt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6915583 |
gaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaactt |
6915484 |
T |
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| Q |
423 |
cctttgct |
430 |
Q |
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| T |
6915483 |
cgtttgct |
6915476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
| Q |
123 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
222 |
Q |
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| T |
15040241 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa |
15040340 |
T |
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| Q |
223 |
gtatc |
227 |
Q |
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||||| |
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| T |
15040341 |
gtatc |
15040345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
| Q |
46 |
tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
119 |
Q |
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| T |
15040064 |
tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
15040137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
| Q |
232 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat |
287 |
Q |
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| T |
15041840 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat |
15041895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
| Q |
337 |
ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt |
399 |
Q |
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| T |
15043792 |
ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt |
15043854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
| Q |
74 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
143 |
Q |
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| T |
43895529 |
ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac |
43895598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
| Q |
74 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
143 |
Q |
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| T |
44305953 |
ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac |
44306022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
| Q |
203 |
taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc |
281 |
Q |
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| T |
35856932 |
taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc |
35856854 |
T |
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