View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3720_high_4 (Length: 301)

Name: NF3720_high_4
Description: NF3720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3720_high_4
NF3720_high_4
[»] chr4 (10 HSPs)
chr4 (11-284)||(7615597-7615870)
chr4 (12-264)||(7606584-7606854)
chr4 (11-175)||(7637414-7637578)
chr4 (191-283)||(7637612-7637704)
chr4 (11-167)||(7628968-7629124)
chr4 (18-172)||(7655748-7655902)
chr4 (191-283)||(7629166-7629258)
chr4 (192-273)||(7655629-7655710)
chr4 (20-59)||(39098047-39098086)
chr4 (17-73)||(7633703-7633759)
[»] chr7 (4 HSPs)
chr7 (11-283)||(8935583-8935873)
chr7 (26-283)||(8910648-8910919)
chr7 (17-115)||(8918826-8918924)
chr7 (250-283)||(8934642-8934675)
[»] chr3 (1 HSPs)
chr3 (192-241)||(40146910-40146959)
[»] chr8 (1 HSPs)
chr8 (192-265)||(15190684-15190757)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 7615597 - 7615870
Alignment:
Q  11 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615597 cacagagcaccaaaggtgagttaaaagcacttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 7615696  T
Q  111 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615697 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggct 7615796  T
Q  211 gttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615797 gttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgat 7615870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 7606584 - 7606854
Alignment:
Q  12 acagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctctt 111  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||  |||||||| |    
T  7606584 acagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttgatggtaccaacctcttcattgattttcgatttcagttgtatgattttctcct 7606683  T
Q  112 ttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacgaa 193  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||                   |  |||    
T  7606684 ttgtgaaatgaaataacctatttgataaacaaagtttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaa 7606783  T
Q  194 aggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgat 264  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  7606784 aggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgat 7606854  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 7637414 - 7637578
Alignment:
Q  11 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 110  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  ||||||||     
T  7637414 cacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcc 7637513  T
Q  111 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaa 175  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||| |||| |||||||||||    
T  7637514 tttgtgaaatgaaataacctatttgataaacaatatttttcctcattaaacgatgaaaaactcaa 7637578  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 7637612 - 7637704
Alignment:
Q  191 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtga 283  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637612 gaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtga 7637704  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 7628968 - 7629124
Alignment:
Q  11 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 110  Q
    |||| |||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||| |  |||||||| ||||| ||||| || ||||||||     
T  7628968 cacatagcaccaaacatgagttagaagcgcttgtagagaagatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcc 7629067  T
Q  111 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaa 167  Q
    ||||| || || ||||  ||||||||||||||||||||||| |||||||| ||||||    
T  7629068 tttgtaaagtggaataatctatttgataaacaaagtttttcatcattagatgacgaa 7629124  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 7655902 - 7655748
Alignment:
Q  18 caccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtga 117  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||  |||||| ||||||||| ||||| |  |||||||  ||||| |    
T  7655902 caccaaagatgagttaaaagcgcttgtagagaagatatttttttggtatcaatctctgcattgactttcgatttcagttgcatgattttcttctttgtaa 7655803  T
Q  118 aatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 172  Q
    | ||||||||||| | ||||| | | |||||||| |||| ||| |||||||||||    
T  7655802 agtgaaatatcctctctgatagaaagagtttttcgtcatcagaagacgaaaaact 7655748  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 7629166 - 7629258
Alignment:
Q  191 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtga 283  Q
    ||||||||||||||||||  |||||| |||||||||||||||||| ||   |||||| |||||||||||||||||||||||||||||||||||    
T  7629166 gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtga 7629258  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 7655710 - 7655629
Alignment:
Q  192 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaac 273  Q
    |||||||||||||| ||  ||||||  |||||||||||||||||||| || |||||||  ||||||||||||||||||||||    
T  7655710 aaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttggggagttagatatttgatgatgacaac 7655629  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 39098047 - 39098086
Alignment:
Q  20 ccaaaggtgagttaaaagcgcttgtagagaagatattttg 59  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  39098047 ccaaaggtgagttaaaagtgcttgtaaagaagatattttg 39098086  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 7633703 - 7633759
Alignment:
Q  17 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctc 73  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    
T  7633703 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctc 7633759  T

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Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 8935873 - 8935583
Alignment:
Q  11 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 110  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| || ||||| |||||||||    
T  8935873 cacacagcaccaaaggtgagttaaaggcgcttgtagagaagatattttgatggtaccaatctcttcattgatttttaatttcagctgtacgattttctct 8935774  T
Q  111 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacga 192  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||   ||||| ||||||||||  |||||  ||                  ||  ||    
T  8935773 tttgtgaaatgaaatattctatttgagaaacaaagtttttcatcatctaacgacaaaaaactcaacccatcagagtgattcttttgttgctccaaagtga 8935674  T
Q  193 aaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtga 283  Q
    ||||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8935673 aaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtga 8935583  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 8910919 - 8910648
Alignment:
Q  26 gtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaat 125  Q
    |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  |||||||| |||||||||||||||    
T  8910919 gtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcctttgtgaaatgaaat 8910820  T
Q  126 atcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacgaaaggaaatcgtatgg 207  Q
    | |||||||||||||||| ||||||||||||||  ||| |||||||||||  |||||  ||                  ||  ||||||||||||||| |    
T  8910819 aacctatttgataaacaatgtttttcctcattaagcgatgaaaaactcaacccatcagagtgatccttttgttgctccaaagtgaaaggaaatcgtatag 8910720  T
Q  208 gctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtga 283  Q
    || |||||||    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8910719 gccgttgaac----tttggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtga 8910648  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 8918924 - 8918826
Alignment:
Q  17 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgt 115  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    |||| ||| ||||| |||||||  |||||||| |||||    
T  8918924 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctctgtgttgacttttgatttcagttgtaagattttctcctttgt 8918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 8934675 - 8934642
Alignment:
Q  250 gtttagatatttgatgatgacaacaactacgtga 283  Q
    ||||| ||||||||||||||||||||||||||||    
T  8934675 gtttaaatatttgatgatgacaacaactacgtga 8934642  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 40146959 - 40146910
Alignment:
Q  192 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctag 241  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||    
T  40146959 aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctag 40146910  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 15190757 - 15190684
Alignment:
Q  192 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatg 265  Q
    |||||||||||||||||  ||||||  |||||||||||  |||| || |||||||| |||  ||||||||||||    
T  15190757 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatatttgatg 15190684  T

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