View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3720_low_6 (Length: 264)
Name: NF3720_low_6
Description: NF3720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3720_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 32729843 - 32729601
Alignment:
| Q |
7 |
ggagcagagatagttcccattatctgcaaaaccaaaaaatatttggtattcacaatattaataaatacgagtcaagaaaaataatttgaatattgaggta |
106 |
Q |
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| T |
32729843 |
ggagcagtgatagttcccattatctgcaaaaccaaa---tatttggtactcataatattaataaatacgagtcaagaaaaataatttgaatattgaggta |
32729747 |
T |
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| Q |
107 |
atatgaagaaatcaacataatgaaattctgtacacatagaaagtgaggcatattttccctagccatgc--atgtctaactaatttattaattccattata |
204 |
Q |
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| T |
32729746 |
atatgaagaaatcaacataatgaaattctgtacacatagaaagtgagacatattttccctagccatgcatatgtctaactaatttattaattcccttata |
32729647 |
T |
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| Q |
205 |
acgtaccttaacactaatggttgtagatttgcaaggaccttgaaat |
250 |
Q |
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| T |
32729646 |
acgtaccttaacactaatggttgtagatttgcaaggaccttgaaat |
32729601 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 38089593 - 38089517
Alignment:
| Q |
170 |
catgcatgtctaactaatttattaattccattataacgtaccttaacactaatggttgtagatttgcaaggaccttg |
246 |
Q |
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| T |
38089593 |
catgcatgtgtaactaaattgttaattcatttataacataccataaccttaacggttgaggatttgcaaggaccttg |
38089517 |
T |
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