View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3720_low_7 (Length: 237)
Name: NF3720_low_7
Description: NF3720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3720_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 22518268 - 22518059
Alignment:
| Q |
16 |
tgattaccgtattgctgcaataactttttatgaagaggttacagaccagaacttggacatttggcatgacacacctgcatttgcatttgcatttgtacct |
115 |
Q |
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| T |
22518268 |
tgattaccgtattgctgcaataactttttatgaagaggttacagaccagaacttggacatttggcatgacacacctgcatttgcatttg------tacct |
22518175 |
T |
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| Q |
116 |
gatgccttgcggcattattattatcaatacttttcatcaccttcgaaagcagctgaggtaaaatttcaatcactctcatctaaccacttccaagtgtttg |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22518174 |
gatgccttgcggcattattattatcaatacctttcatcaccttcgaaagcggctgaggtaaaatttcaatcactctcatctaaccacttccaagtgtttg |
22518075 |
T |
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| Q |
216 |
cacaatcaattccttt |
231 |
Q |
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|||||||||||||||| |
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| T |
22518074 |
cacaatcaattccttt |
22518059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 37191176 - 37191378
Alignment:
| Q |
16 |
tgattaccgtattgctgcaataactttttatgaagaggttacagaccagaacttggacatttggcatgacacacctgcatttgcatttgcatttgtacct |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
37191176 |
tgattaccgtcttgctgcaataactttttatgaagaggttacagaccagaacttggacatttggcatgacacac----------acctgcatttgtacct |
37191265 |
T |
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| Q |
116 |
gatgccttgcggcattattattatcaatacttttcatcaccttcgaaagcagctgaggtaaaatttcaatcactctcatctaaccacttccaagtgtttg |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
37191266 |
gatgccttgcggcattattattatcaatacctttcatcaccttcgaaagcggctgaggtaaaatttcaatcactctcacctaaccacttcaatgtgtttg |
37191365 |
T |
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| Q |
216 |
cacaatcaattcc |
228 |
Q |
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| T |
37191366 |
cacaatcagttcc |
37191378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 31682291 - 31682195
Alignment:
| Q |
51 |
aggttacagaccagaacttggacatttggcatgacacacctgcatttgcatttgcatttgtacctgatgccttgcggcattattattatcaatacttttc |
150 |
Q |
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| T |
31682291 |
aggttacagaccagaacttggacatttggcacaacacacctgcatctg------------tacctgatgccttgcggcattattattatcaatatctttc |
31682204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 13885269 - 13885215
Alignment:
| Q |
169 |
tgaggtaaaatttcaatcactctcatctaaccacttccaagtgtttgcacaatca |
223 |
Q |
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| T |
13885269 |
tgaggtaaaatttcaattactttcacctaaccacttcaatgtgtttgcacaatca |
13885215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 202505 - 202561
Alignment:
| Q |
103 |
tgcatttgtacctgatgccttgcggcattattattatcaatacttttcatcaccttc |
159 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||| || |||||||| |||| |
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| T |
202505 |
tgcattagtaccagatgccttgcgtcattattattatcactatctttcatcaacttc |
202561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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