View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3721_high_4 (Length: 231)
Name: NF3721_high_4
Description: NF3721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3721_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 26296071 - 26296214
Alignment:
| Q |
76 |
ctaacaaatgaacactcattgtgtagttttccaccatgagttgaaggcctcaaatcaatattgtccaaagtaatgttttggcatggtttgttttgagagc |
175 |
Q |
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| T |
26296071 |
ctaacaaatgaacacacattgtgtagttttccactatgagtagaaggcctcaaatcaatattctccaaagtaatattttggcatggtttgttttgagtgc |
26296170 |
T |
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| Q |
176 |
agttgaaacttgctgcaacctctgtatttccacttcctctgatg |
219 |
Q |
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| T |
26296171 |
aattgaaacttgctgcaacttctaaatttccacttcctctgatg |
26296214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 26297812 - 26297755
Alignment:
| Q |
18 |
gatttccatgacatttcaacgataacctatataatttttctttataaagaaaacaacc |
75 |
Q |
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| T |
26297812 |
gatttccatgacatttcaacaataacctatataatttttctttataaagaaaacaacc |
26297755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 11533009 - 11532871
Alignment:
| Q |
77 |
taacaaatgaacactcattgtgtagttttccaccatgagttgaaggcctcaaatcaatattgtccaaagtaatgttttggcatggtttgttttgagagca |
176 |
Q |
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|||||||| ||||| |||||| || |||| || |||| ||||||| ||||| |||||| |||| ||||||||||||||||||| |||||| ||| |
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| T |
11533009 |
taacaaataaacacacattgtttaattttttactatgaccagaaggccacaaattaatattctccattctaatgttttggcatggtttattttgactgca |
11532910 |
T |
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| Q |
177 |
gttgaaacttgctgcaacctctgtatttccacttcctct |
215 |
Q |
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| T |
11532909 |
ttcaaaacttgctgcaacttttgtatttccacttcctct |
11532871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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