View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3721_low_3 (Length: 282)
Name: NF3721_low_3
Description: NF3721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3721_low_3 |
 | |
|
| [»] chr5 (11 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 39471983 - 39472264
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471983 |
tccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
39472082 |
T |
|
| Q |
101 |
accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39472083 |
accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat |
39472182 |
T |
|
| Q |
201 |
caaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39472183 |
caaccttccagaatgttctcttgccccaaacacagatcaaggtccctctatgactgcgctcctcgaagctcagaaaccaaac |
39472264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 39475453 - 39475737
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| | | | | ||| || |||| | || ||||||| ||||||||||||||| ||||||| |
|
|
| T |
39475453 |
tccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgata |
39475552 |
T |
|
| Q |
101 |
accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| || || ||| ||||||| |
|
|
| T |
39475553 |
accgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcat |
39475652 |
T |
|
| Q |
201 |
caaccttccagaatgttctcttgccccaaacacagatcaaggttcctct---atgactgcgctcctcgaagctcagaaaccaaac |
282 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| ||||| |||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
39475653 |
caaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaac |
39475737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 39450949 - 39451230
Alignment:
| Q |
3 |
caagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| | || | | ||| ||||||| | || || || ||||||||||||||||| ||||||||| |
|
|
| T |
39450949 |
caagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataac |
39451048 |
T |
|
| Q |
103 |
cgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatca |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
39451049 |
cgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatca |
39451148 |
T |
|
| Q |
203 |
accttccagaatgttctcttgccccaaacacagatcaaggtt---cctctatgactgcgctcctcgaagctcagaaaccaaa |
281 |
Q |
| |
|
||||||||||| ||||||| | |||||||| ||| ||||| | || ||| |||| ||||||||||||||||||||||| |
|
|
| T |
39451149 |
accttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaa |
39451230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 39454592 - 39454867
Alignment:
| Q |
7 |
atgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtc |
106 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| | || || ||| ||||||| | || ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
|
| Q |
107 |
tccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaacct |
206 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||| ||||| ||||| |||| |||||| ||||| |||||||||||| ||| |||||||||||| |
|
|
| T |
39454692 |
tccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaacct |
39454791 |
T |
|
| Q |
207 |
tccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac |
282 |
Q |
| |
|
||||||||| |||||| |||||||||| ||| || |||||| ||| | || | ||| |||||||||||||||||| |
|
|
| T |
39454792 |
tccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaaaccaaac |
39454867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 39464750 - 39464475
Alignment:
| Q |
7 |
atgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtc |
106 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| |||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39464750 |
atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc |
39464651 |
T |
|
| Q |
107 |
tccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaacct |
206 |
Q |
| |
|
|||||||||| | ||||| |||||| ||||||| | | ||||| |||||||||||||||||||| |||| || || ||||| || | |||||||||| |
|
|
| T |
39464650 |
tccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaacct |
39464551 |
T |
|
| Q |
207 |
tccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac |
282 |
Q |
| |
|
||||||| ||||||| ||| || | | |||| ||||||| |||||| || ||||| || ||||| ||||||||| |
|
|
| T |
39464550 |
tccagaagtttctcttccccaaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaac |
39464475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39486406 - 39486644
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||| || | || |||||| ||||||| | || || ||||| |||||||||||||||||||||| |
|
|
| T |
39486406 |
tccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgata |
39486505 |
T |
|
| Q |
101 |
accgtctccgaataactgttttagttatcaaattcccacacatcacaga-aac-----cgatgtctacactaaatcccttcctatctccgattcactcca |
194 |
Q |
| |
|
|||||||||||||||| | || || |||||||||||||||| |||||| || |||||||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
39486506 |
accgtctccgaataaccatcttggtcatcaaattcccacacaccacagatgacgatgtcgatgtctacacaaaatcccttcccatttccgattctctcca |
39486605 |
T |
|
| Q |
195 |
catcatcaaccttccagaatgttctcttgccccaaacac |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39486606 |
ggtcatcaaccttccagaatgttctcttcccccaaacac |
39486644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39458516 - 39458286
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||| || | || |||||| ||||||| | ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
39458516 |
tccaggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgata |
39458417 |
T |
|
| Q |
101 |
accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat |
200 |
Q |
| |
|
||||||||||||||||| | || || || ||||| ||||||| ||||||| ||||||||||||||||||||| | ||| |||||| || |||| | |
|
|
| T |
39458416 |
accgtctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgt |
39458317 |
T |
|
| Q |
201 |
caaccttccagaatgttctcttgccccaaac |
231 |
Q |
| |
|
| |||||||||||||||||||| |||||||| |
|
|
| T |
39458316 |
cgaccttccagaatgttctcttcccccaaac |
39458286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 39470979 - 39470698
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||| || ||||||| |||| |||||| |||||||||| | ||||| || |||||||||||||||| ||||| |
|
|
| T |
39470979 |
tccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgata |
39470880 |
T |
|
| Q |
101 |
accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat |
200 |
Q |
| |
|
|||| ||| |||||||||| ||||| || ||||||||||||| ||||| | ||||||||| |||||||| |||| ||||| ||||| ||||| |||| |
|
|
| T |
39470879 |
accgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcat |
39470780 |
T |
|
| Q |
201 |
caaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac |
282 |
Q |
| |
|
||||||||||||| |||| || ||||| | | |||| |||||| ||||| || |||||||||||||| ||| ||||| |
|
|
| T |
39470779 |
caaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaac |
39470698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39460197 - 39460428
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||| | | | | ||| ||| ||| | || ||||| || |||||||||| ||||||||||| |
|
|
| T |
39460197 |
tccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgata |
39460296 |
T |
|
| Q |
101 |
accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat |
200 |
Q |
| |
|
| || |||||||| ||||| |||| || ||| ||||| ||| ||||| ||||||| |||||||||| ||||| | || ||||| ||| ||||||| |
|
|
| T |
39460297 |
agcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcat |
39460396 |
T |
|
| Q |
201 |
caaccttccagaatgttctcttgccccaaaca |
232 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |
|
|
| T |
39460397 |
caaccttccagaagtttctcttcccccaaaca |
39460428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39480320 - 39480441
Alignment:
| Q |
1 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| || || ||| || | || |||||| ||||||| | || || || ||||||||||||||||||||||||| |
|
|
| T |
39480320 |
tccaggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgata |
39480419 |
T |
|
| Q |
101 |
accgtctccgaataactgtttt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39480420 |
accgtctccgaataactgtttt |
39480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 43312730 - 43312626
Alignment:
| Q |
6 |
gatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt |
105 |
Q |
| |
|
|||||||||| ||||||||||||| || ||| ||| | || ||| ||| |||| || | || |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
43312730 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgt |
43312631 |
T |
|
| Q |
106 |
ctccg |
110 |
Q |
| |
|
||||| |
|
|
| T |
43312630 |
ctccg |
43312626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University